RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 A8MXQ7 604 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 O00370 1275 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 NRP1O14786 923 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 RTN2O75298 545 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 EFEMP2O95967 443 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 GALTP07902 379 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 ODC1P11926 461 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 LMO2P25791 158 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 CDH5P33151 784 aaPredicted RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 NOMO3P69849 1222 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 CNGA2Q16280 664 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 PSRC1Q6PGN9 363 aaPredicted RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 CMTR2Q8IYT2 770 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 PACSIN1Q9BY11 444 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 LACRTQ9GZZ8 138 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 LUC7LQ9NQ29 371 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 PUF60Q9UHX1 559 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 DSEQ9UL01 958 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 PCDHB8Q9UN66 801 aa15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 PRG3Q9Y2Y8 225 aaPredicted RBP15.68■□□□□ 0.1
SHKBP1-211ENST00000595945 ARHGEF37A1IGU5 675 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 BTNL10A8MVZ5 291 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 I3L4J1 428 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 MED7O43513 233 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 HCRTO43612 131 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 LSM8O95777 96 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ABL1P00519 1130 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ALDH2P05091 517 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 H2AFZP0C0S5 128 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 CD19P15391 556 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 LHX1P48742 406 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 CENPCQ03188 943 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 PAN2Q504Q3 1202 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 SGO2Q562F6 1265 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ARHGAP17Q68EM7 881 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ACAD10Q6JQN1 1059 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 LCLAT1Q6UWP7 414 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 NYAP1Q6ZVC0 841 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 H2AFVQ71UI9 128 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 OTOP2Q7RTS6 562 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 TMCO2Q7Z6W1 182 aaPredicted RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 KIAA1328Q86T90 577 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ACOT1Q86TX2 421 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 TXLNBQ8N3L3 684 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 HASPINQ8TF76 798 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 HERVK_113Q902F9 699 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 CYFIP2Q96F07 1278 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 HEXIM2Q96MH2 286 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 RTP3Q9BQQ7 232 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 COLEC11Q9BWP8 271 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 LHX5Q9H2C1 402 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 DPEP3Q9H4B8 488 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 SEPT11Q9NVA2 429 aaKnown RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ADAM28Q9UKQ2 775 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 ZMYND8Q9ULU4 1186 aaPredicted RBP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 TFR2Q9UP52 801 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 FAN1Q9Y2M0 1017 aa15.67■□□□□ 0.1
SHKBP1-211ENST00000595945 GBF1Q92538 1859 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 SYN1P17600 705 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 GALCP54803 685 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 HTRA4P83105 476 aaPredicted RBP15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 STILQ15468 1287 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 KIAA0319Q5VV43 1072 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 PPP1R2P3Q6NXS1 205 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 DENND1BQ6P3S1 775 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 DNAAF5Q86Y56 855 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 TSGA10Q9BZW7 698 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 ZNF518BQ9C0D4 1074 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 DDX43Q9NXZ2 648 aaKnown RBP15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 CXXC1Q9P0U4 656 aaPredicted RBP15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 TRIM10Q9UDY6 481 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 TIMM13Q9Y5L4 95 aaPredicted RBP15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 NCANO14594 1321 aa15.66■□□□□ 0.1
SHKBP1-211ENST00000595945 ANKRD62A6NC57 917 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TMCO5BA8MYB1 307 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 SYN3O14994 580 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TRAPPC3O43617 180 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TADA2AO75478 443 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 MICAL2O94851 1124 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 FTLP02792 175 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 PDGFRBP09619 1106 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TMEM253P0C7T8 217 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 FGFR3P22607 806 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 BCAR1P56945 870 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 KIF5AQ12840 1032 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TCEAL1Q15170 157 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 PKDCCQ504Y2 493 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 PPP1R26Q5T8A7 1209 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 RASIP1Q5U651 963 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 NAA35Q5VZE5 725 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 METTL23Q86XA0 190 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 PHF13Q86YI8 300 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 WDTC1Q8N5D0 677 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 C12orf29Q8N999 325 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 BCL7CQ8WUZ0 217 aaPredicted RBP15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 TNIP3Q96KP6 325 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 LPIN3Q9BQK8 851 aa15.65■□□□□ 0.1
SHKBP1-211ENST00000595945 SYT15Q9BQS2 421 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms