RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 BGNP21810 368 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 AMPD1P23109 780 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 FOXN2P32314 431 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 AQP5P55064 265 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 STX3Q13277 289 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 RASA3Q14644 834 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TCHHL1Q5QJ38 904 aaPredicted RBP12.88□□□□□ -0.35
LIG1-207ENST00000594759 TTC33Q6PID6 262 aaPredicted RBP12.88□□□□□ -0.35
LIG1-207ENST00000594759 C3orf62Q6ZUJ4 267 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SIX6OS1Q8N1H7 587 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 ZNF786Q8N393 782 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 RASGEF1CQ8N431 466 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SMYD1Q8NB12 490 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TCP10LQ8TDR4 215 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 CORO1BQ9BR76 489 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 TRPC7Q9HCX4 862 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 NR2E1Q9Y466 385 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SPATA31A5Q5VU36 1347 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 SPATA31A7Q8IWB4 1347 aa12.88□□□□□ -0.35
LIG1-207ENST00000594759 AIM2O14862 343 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 MAGEB3O15480 346 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 TLR2O60603 784 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CCDC130P13994 396 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 GEMIN4P57678 1058 aaKnown RBP12.87□□□□□ -0.35
LIG1-207ENST00000594759 KLHDC10Q6PID8 442 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 VSTM1Q6UX27 236 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 PRELID2Q8N945 189 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 TSPAN14Q8NG11 270 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 NKX2-3Q8TAU0 364 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CAPSLQ8WWF8 208 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 HES6Q96HZ4 224 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 BTBD6Q96KE9 485 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 UPF3AQ9H1J1 476 aaKnown RBP12.87□□□□□ -0.35
LIG1-207ENST00000594759 FAM96AQ9H5X1 160 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ADA2Q9NZK5 511 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 PNPLA7Q6ZV29 1317 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 MEI4A8MW99 385 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CFAP99D6REC4 459 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 SPTLC1O15269 473 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 BIRC5O15392 142 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 PON1P27169 355 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 HALP42357 657 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 DYNLT1P63172 113 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 NUP93Q8N1F7 819 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 BORCS5Q969J3 196 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 SNX25Q9H3E2 840 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 DCP1AQ9NPI6 582 aaPredicted RBP12.87□□□□□ -0.35
LIG1-207ENST00000594759 MRGBPQ9NV56 204 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 TMEM59LQ9UK28 342 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 POTEB3A0JP26 581 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 BTNL10A8MVZ5 291 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ALDH1A3P47895 512 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CD151P48509 253 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 MFAP3P55082 362 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 OXCT1P55809 520 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 MTM1Q13496 603 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CERKLQ49MI3 558 aaPredicted RBP12.87□□□□□ -0.35
LIG1-207ENST00000594759 WDR44Q5JSH3 913 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 POTEBQ6S5H4 581 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 RHPN2Q8IUC4 686 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 PHC3Q8NDX5 983 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 CLPTM1LQ96KA5 538 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 BRIP1Q9BX63 1249 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 OCEL1Q9H607 264 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ERVK-5Q9HDB9 667 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 TBCCD1Q9NVR7 557 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 PCYOX1Q9UHG3 505 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ZNF510Q9Y2H8 683 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ADGRA3Q8IWK6 1321 aa12.87□□□□□ -0.35
LIG1-207ENST00000594759 ZNF839A8K0R7 811 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 ATMINO43313 823 aaPredicted RBP12.86□□□□□ -0.35
LIG1-207ENST00000594759 CCDC159P0C7I6 412 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 KRT3P12035 628 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 GFAPP14136 432 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 VEGFAP15692 232 aaPredicted RBP12.86□□□□□ -0.35
LIG1-207ENST00000594759 PORP16435 677 aaPredicted RBP12.86□□□□□ -0.35
LIG1-207ENST00000594759 TMEM62Q0P6H9 643 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 NDUFA5Q16718 116 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 PPP1R2P3Q6NXS1 205 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 AAGABQ6PD74 315 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 TPH2Q8IWU9 490 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 DEFB107AQ8IZN7 70 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 GSTCDQ8NEC7 633 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 ART4Q93070 314 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 CFAP36Q96G28 342 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 SH3GL1Q99961 368 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 CD209Q9NNX6 404 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 BARHL2Q9NY43 387 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 RPTORQ8N122 1335 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 HTR3EA5X5Y0 456 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 PEX1O43933 1283 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 KRT1P04264 644 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 TRIM49P0CI25 452 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 TRIM49CP0CI26 452 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 MAPK6Q16659 721 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 SYDE2Q5VT97 1194 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 DPY19L2Q6NUT2 758 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 GLIS3Q8NEA6 775 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 GATA6Q92908 595 aa12.86□□□□□ -0.35
LIG1-207ENST00000594759 POP1Q99575 1024 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms