RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 KBTBD7Q8WVZ9 684 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 PGLYRP2Q96PD5 576 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 TMEM209Q96SK2 561 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 DUSP9Q99956 384 aaKnown RBP12.75□□□□□ -0.37
LIG3-213ENST00000590630 IMPG2Q9BZV3 1241 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 METTL14Q9HCE5 456 aaKnown RBP12.75□□□□□ -0.37
LIG3-213ENST00000590630 TMEM8AQ9HCN3 771 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 ARMCX3Q9UH62 379 aaPredicted RBP12.75□□□□□ -0.37
LIG3-213ENST00000590630 POLIQ9UNA4 740 aa12.75□□□□□ -0.37
LIG3-213ENST00000590630 CLSTN1O94985 981 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 VNN2O95498 520 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 GNA14O95837 355 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 ASS1P00966 412 aaKnown RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 HLA-DRAP01903 254 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 WARSP23381 471 aaKnown RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 MXI1P50539 228 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 DUSP4Q13115 394 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 PLD1Q13393 1074 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 NFE2Q16621 373 aaPredicted RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 DCAF17Q5H9S7 520 aaPredicted RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 INTS6LQ5JSJ4 861 aaKnown RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 KRT39Q6A163 491 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 GRASPQ7Z6J2 395 aaPredicted RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 FRMD5Q7Z6J6 570 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 LRRTM3Q86VH5 581 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 ELMOD1Q8N336 334 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 PLCD3Q8N3E9 789 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 TDRD5Q8NAT2 981 aaKnown RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 ATAD1Q8NBU5 361 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 SPPL2BQ8TCT7 592 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 ACSF2Q96CM8 615 aaPredicted RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 SNX25Q9H3E2 840 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 CD320Q9NPF0 282 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIG3-213ENST00000590630 NXF1Q9UBU9 619 aaKnown RBP12.74□□□□□ -0.37
LIG3-213ENST00000590630 RWDD2AQ9UIY3 292 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 CDH9Q9ULB4 789 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 YIPF1Q9Y548 306 aa12.74□□□□□ -0.37
LIG3-213ENST00000590630 FGFR1OPO95684 399 aaKnown RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 SP100P23497 879 aaPredicted RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 ACAT1P24752 427 aaKnown RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 GNL1P36915 607 aaPredicted RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 ALDH1A3P47895 512 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 TUFMP49411 452 aaKnown RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 EPHB3P54753 998 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 STX17P56962 302 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 TWF1Q12792 350 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 MAPRE1Q15691 268 aaKnown RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 CCDC40Q4G0X9 1142 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 PABPC1LQ4VXU2 614 aaKnown RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 TCERG1LQ5VWI1 586 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 IQCEQ6IPM2 695 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 OSTM1Q86WC4 334 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 ZDHHC14Q8IZN3 488 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 CCDC150Q8NCX0 1101 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 TAS1R2Q8TE23 839 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 SLC35C1Q96A29 364 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 PKMYT1Q99640 499 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 CRISPLD1Q9H336 500 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 MMRN2Q9H8L6 949 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 ABCB6Q9NP58 842 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 AVENQ9NQS1 362 aaPredicted RBP12.73□□□□□ -0.37
LIG3-213ENST00000590630 DACH1Q9UI36 760 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 PCDHB5Q9Y5E4 795 aa12.73□□□□□ -0.37
LIG3-213ENST00000590630 C2CD4DB7Z1M9 353 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 PTPN2P17706 415 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 FSHRP23945 695 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 LMO2P25791 158 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 MARSP56192 900 aaKnown RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 NLRP12P59046 1061 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 NOP14P78316 857 aaKnown RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 DPCR1Q3MIW9 517 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 MGAT5BQ3V5L5 792 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 CFAP221Q4G0U5 840 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 FAM171BQ6P995 826 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 RBM43Q6ZSC3 357 aaKnown RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 RNF135Q8IUD6 432 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 LEMD2Q8NC56 503 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 FBXL13Q8NEE6 735 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 OR6B3Q8NGW1 331 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 FUBP3Q96I24 572 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIG3-213ENST00000590630 FAXDC2Q96IV6 333 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 ZNF512Q96ME7 567 aaPredicted RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 SYT15Q9BQS2 421 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 MRPL45Q9BRJ2 306 aaKnown RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 SMYD3Q9H7B4 428 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 HCFC1R1Q9NWW0 138 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 ABI2Q9NYB9 513 aaPredicted RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 DNMT3BQ9UBC3 853 aaKnown RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 SLC27A5Q9Y2P5 690 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 ASB3Q9Y575 518 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 ZFP37Q9Y6Q3 630 aaPredicted RBP12.72□□□□□ -0.37
LIG3-213ENST00000590630 MYH10P35580 1976 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 GREB1Q4ZG55 1949 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 DENND4CQ5VZ89 1909 aa12.72□□□□□ -0.37
LIG3-213ENST00000590630 A8MXQ7 604 aa12.71□□□□□ -0.37
LIG3-213ENST00000590630 HCRTO43612 131 aa12.71□□□□□ -0.37
LIG3-213ENST00000590630 RHOP08100 348 aa12.71□□□□□ -0.37
LIG3-213ENST00000590630 PDGFRBP09619 1106 aa12.71□□□□□ -0.37
LIG3-213ENST00000590630 CCDC192P0DO97 292 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms