RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 RGS18Q9NS28 235 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 TMEM39AQ9NV64 488 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 TMEM161AQ9NX61 479 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 UVRAGQ9P2Y5 699 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 SIX4Q9UIU6 781 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 NOCTQ9UK39 431 aaKnown RBP6.58□□□□□ -1.36
LIG3-206ENST00000586058 GTF3C4Q9UKN8 822 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 POLIQ9UNA4 740 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 CNTN6Q9UQ52 1028 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.58□□□□□ -1.36
LIG3-206ENST00000586058 HYOU1Q9Y4L1 999 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 TTC3P53804 2025 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 VWA8A3KMH1 1905 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 GBF1Q92538 1859 aa6.58□□□□□ -1.36
LIG3-206ENST00000586058 ZNF638Q14966 1978 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 SPOPO43791 374 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 SLU7O95391 586 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 POMCP01189 267 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 PFKMP08237 780 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 WEE2P0C1S8 567 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 FAM163BP0C2L3 166 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 SETSIPP0DME0 302 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 RAG1P15918 1043 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 BRD2P25440 801 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 PCSK1P29120 753 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 CETN2P41208 172 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 PAFAH1B1P43034 410 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 RAP1GAPP47736 663 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 LHX1P48742 406 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 GUCY2FP51841 1108 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 NDST1P52848 882 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 IKBKEQ14164 716 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 DSC3Q14574 896 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 MAPRE1Q15691 268 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 WHAMMP3Q1A5X7 153 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 XKR4Q5GH76 650 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 NAA35Q5VZE5 725 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 C11orf63Q6NUN7 778 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 DNAJC24Q6P3W2 148 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 CNKSR3Q6P9H4 555 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 DCUN1D2Q6PH85 259 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 ALKAL1Q6UXT8 129 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 ERICH1Q86X53 443 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 PASD1Q8IV76 773 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 THEM5Q8N1Q8 247 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 LRRC43Q8N309 656 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 TMEM199Q8N511 208 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 SLC30A5Q8TAD4 765 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 ZNF564Q8TBZ8 553 aaPredicted RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 ZNF606Q8WXB4 792 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 LPPQ93052 612 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 C18orf25Q96B23 403 aaPredicted RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 VCPIP1Q96JH7 1222 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 FAM84AQ96KN4 292 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 RPGRIP1Q96KN7 1286 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 ZMAT2Q96NC0 199 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 PPP1R10Q96QC0 940 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 C11orf70Q9BRQ4 267 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 ISCUQ9H1K1 167 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 GDAP2Q9NXN4 497 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 ADAM22Q9P0K1 906 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 WDR35Q9P2L0 1181 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 CNOT8Q9UFF9 292 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 AMFRQ9UKV5 643 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 PCDHGC3Q9UN70 934 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 REXO2Q9Y3B8 237 aaKnown RBP6.57□□□□□ -1.36
LIG3-206ENST00000586058 SAR1BQ9Y6B6 198 aa6.57□□□□□ -1.36
LIG3-206ENST00000586058 PLXNA3P51805 1871 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 CASTOR2A6NHX0 329 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 MIF4GDA9UHW6 222 aaKnown RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 PIRO00625 290 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 CYB561D2O14569 222 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 PTGESO14684 152 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 ZNF263O14978 683 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 PALMO75781 387 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 AMHP03971 560 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 ACO1P21399 889 aaKnown RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 GNL1P36915 607 aaPredicted RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 ARHGAP25P42331 645 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 OR1G1P47890 313 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 CLCNKBP51801 687 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 ZNF132P52740 706 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 TERF1P54274 439 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 BCAT1P54687 386 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 HADHBP55084 474 aaKnown RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 CCL23P55773 120 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 NOMO3P69849 1222 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 TSPY1Q01534 308 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 ELAVL2Q12926 359 aaKnown RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 ZBTB6Q15916 424 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 GOLGA7BQ2TAP0 167 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 PLEKHG4Q58EX7 1191 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 NOMO2Q5JPE7 1267 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 ZFYVE27Q5T4F4 411 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 SEL1L2Q5TEA6 688 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 AGMOQ6ZNB7 445 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 DEFB128Q7Z7B8 93 aa6.56□□□□□ -1.36
LIG3-206ENST00000586058 PHF13Q86YI8 300 aaPredicted RBP6.56□□□□□ -1.36
LIG3-206ENST00000586058 NPAS4Q8IUM7 802 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms