RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SV2CQ496J9 727 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 GPIHBP1Q8IV16 184 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ARID3BQ8IVW6 561 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-209ENST00000582653 C1orf127Q8N9H9 656 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 IQUBQ8NA54 791 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ZBTB44Q8NCP5 570 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 C2orf15Q8WU43 125 aaKnown RBP22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ATRIPQ8WXE1 791 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 FAM3CQ92520 227 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 RUBCNQ92622 972 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 SEPT5Q99719 369 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-209ENST00000582653 MKNK1Q9BUB5 465 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ATXN3LQ9H3M9 355 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 PCDHA7Q9UN72 937 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 PCDHGA2Q9Y5H1 932 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 POLR2DO15514 142 aaKnown RBP22.05■■□□□ 1.12
SHMT1-209ENST00000582653 GABRR2P28476 465 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 WEE1P30291 646 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 ID4P47928 161 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 MTAPQ13126 283 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 MGAT5BQ3V5L5 792 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 STXBP5Q5T5C0 1151 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 YAF2Q8IY57 180 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 GPD1LQ8N335 351 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 CSGALNACT2Q8N6G5 542 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 CACTINQ8WUQ7 758 aaKnown RBP22.05■■□□□ 1.12
SHMT1-209ENST00000582653 RSPRY1Q96DX4 576 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 LPIN3Q9BQK8 851 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 LMAN1LQ9HAT1 526 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 ZSCAN32Q9NX65 697 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 NDRG2Q9UN36 371 aaKnown RBP22.05■■□□□ 1.12
SHMT1-209ENST00000582653 PIAS3Q9Y6X2 628 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 NCANO14594 1321 aa22.05■■□□□ 1.12
SHMT1-209ENST00000582653 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-209ENST00000582653 ME1P48163 572 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 AMPD3Q01432 767 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 LMBRD2Q68DH5 695 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-209ENST00000582653 STXBP4Q6ZWJ1 553 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 CXorf38Q8TB03 319 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 FAM200AQ8TCP9 573 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 SPPL2BQ8TCT7 592 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 CSGALNACT1Q8TDX6 532 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 ZNF560Q96MR9 790 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 FAM126AQ9BYI3 521 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-209ENST00000582653 BLZF1Q9H2G9 400 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 CHRDQ9H2X0 955 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 OBP2AQ9NY56 170 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 FANCMQ8IYD8 2048 aa22.04■■□□□ 1.12
SHMT1-209ENST00000582653 KRT19P08727 400 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 ATF6P18850 670 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 PNPLA4P41247 253 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 DNM1Q05193 864 aaKnown RBP22.03■■□□□ 1.12
SHMT1-209ENST00000582653 VEPH1Q14D04 833 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 ARHGAP15Q53QZ3 475 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 C1orf228Q6PIY5 440 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 CBWD2Q8IUF1 395 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 DCP1BQ8IZD4 617 aaKnown RBP22.03■■□□□ 1.12
SHMT1-209ENST00000582653 GIPC2Q8TF65 315 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 MSANTD3Q96H12 275 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 LRRC3BQ96PB8 259 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 C7orf25Q9BPX7 421 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 IER2Q9BTL4 223 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 MTMR12Q9C0I1 747 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 PRMT8Q9NR22 394 aaPredicted RBP22.03■■□□□ 1.12
SHMT1-209ENST00000582653 TMLHEQ9NVH6 421 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 WDR87Q6ZQQ6 2873 aa22.03■■□□□ 1.12
SHMT1-209ENST00000582653 LILRB5O75023 590 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 HAPLN1P10915 354 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-209ENST00000582653 CHRNB1P11230 501 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 PDIA4P13667 645 aaKnown RBP22.02■■□□□ 1.12
SHMT1-209ENST00000582653 CCNE1P24864 410 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 BFSP1Q12934 665 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 GPR158Q5T848 1215 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 CNNM4Q6P4Q7 775 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 TSSK4Q6SA08 328 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 EPM2AIP1Q7L775 607 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-209ENST00000582653 PDCL2Q8N4E4 241 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 ZNF507Q8TCN5 953 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 TASP1Q9H6P5 420 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 C8orf33Q9H7E9 229 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-209ENST00000582653 ABI2Q9NYB9 513 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-209ENST00000582653 HSPBP1Q9NZL4 362 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 SIX4Q9UIU6 781 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 L1RE1Q9UN81 338 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 PTPRJQ12913 1337 aa22.02■■□□□ 1.12
SHMT1-209ENST00000582653 TCHHQ07283 1943 aa22.02■■□□□ 1.11
SHMT1-209ENST00000582653 DPYSL4O14531 572 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 TMEM191BP0C7N4 346 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 CDC25CP30307 473 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 AFMP43652 599 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 TAF12Q16514 161 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 ARHGAP29Q52LW3 1261 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 FAM26FQ5R3K3 315 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 RESP18Q5W5W9 173 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 ERMP1Q7Z2K6 904 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 NELFCDQ8IXH7 590 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 KIAA2013Q8IYS2 634 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 DCLK2Q8N568 766 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 OR5B17Q8NGF7 314 aa22.01■■□□□ 1.11
SHMT1-209ENST00000582653 IL21Q9HBE4 155 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms