RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 CCDC85CA6NKD9 419 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 ZNF263O14978 683 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 KRT86O43790 486 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 OAZ2O95190 189 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 H2AFZP0C0S5 128 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 SETSIPP0DME0 302 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 MYBL1P10243 752 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 BCAR1P56945 870 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 DEFB103AP81534 67 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 KIF5AQ12840 1032 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 MAPRE1Q15691 268 aaKnown RBP16.24■□□□□ 0.19
SS18-206ENST00000577572 CLEC16AQ2KHT3 1053 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 RASIP1Q5U651 963 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 WSCD1Q658N2 575 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 LCLAT1Q6UWP7 414 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 KIAA1328Q86T90 577 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 TMEM130Q8N3G9 435 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 TMEM35BQ8NCS4 154 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 SLC20A1Q8WUM9 679 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 UBE2Q2Q8WVN8 375 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.24■□□□□ 0.19
SS18-206ENST00000577572 MIS12Q9H081 205 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 CWH43Q9H720 699 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 DNAJB4Q9UDY4 337 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 REXO2Q9Y3B8 237 aaKnown RBP16.24■□□□□ 0.19
SS18-206ENST00000577572 SLC4A7Q9Y6M7 1214 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 COL4A6Q14031 1691 aa16.24■□□□□ 0.19
SS18-206ENST00000577572 TDRD15B5MCY1 1934 aaKnown RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 SCN1AP35498 2009 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 A0A0A6YYK5 440 aaPredicted RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 ANKRD62A6NC57 917 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 KIF2AO00139 706 aaPredicted RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 O00370 1275 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 B4GALT3O60512 393 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 MMEP08473 750 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 UNGP13051 313 aaPredicted RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 CD19P15391 556 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 PPM1AP35813 382 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 SLC11A1P49279 550 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 SNX16P57768 344 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 CENPCQ03188 943 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 BTG3Q14201 252 aaPredicted RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 TCEAL1Q15170 157 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 ZNF394Q53GI3 561 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 ACAD10Q6JQN1 1059 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 RNF10Q8N5U6 811 aaKnown RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 B3GALNT2Q8NCR0 500 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 MSANTD4Q8NCY6 345 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 ACRBPQ8NEB7 543 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 STK32AQ8WU08 396 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 PPP1R13BQ96KQ4 1090 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 ZNF558Q96NG5 402 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 TWNKQ96RR1 684 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 YME1L1Q96TA2 773 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 RAD9AQ99638 391 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 DESI2Q9BSY9 194 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 DDX43Q9NXZ2 648 aaKnown RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 MYO1AQ9UBC5 1043 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 PUF60Q9UHX1 559 aaKnown RBP16.23■□□□□ 0.19
SS18-206ENST00000577572 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.23■□□□□ 0.19
SS18-206ENST00000577572 ALPK3Q96L96 1907 aa16.23■□□□□ 0.19
SS18-206ENST00000577572 ZBBXA8MT70 800 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 EFEMP2O95967 443 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 TMEM253P0C7T8 217 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 FGFR3P22607 806 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 GATMP50440 423 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 NOMO3P69849 1222 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 CYP27A1Q02318 531 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 SMARCB1Q12824 385 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 ARHGAP29Q52LW3 1261 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 TAF3Q5VWG9 929 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 OVOS1Q6IE37 1185 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 PHF13Q86YI8 300 aaPredicted RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 REXO1L1PQ8IX06 675 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 SP7Q8TDD2 431 aaPredicted RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 TFAP2BQ92481 460 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 NOX5Q96PH1 765 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 HNRNPABQ99729 332 aaKnown RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 ACP6Q9NPH0 428 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 CYLDQ9NQC7 956 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 SEPT11Q9NVA2 429 aaKnown RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 MARCH5Q9NX47 278 aa16.22■□□□□ 0.19
SS18-206ENST00000577572 PRG3Q9Y2Y8 225 aaPredicted RBP16.22■□□□□ 0.19
SS18-206ENST00000577572 OR6C75A6NL08 312 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 H7C4K7 107 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 FTLP02792 175 aaPredicted RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 PTPN1P18031 435 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 BRD2P25440 801 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 NSFP46459 744 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 BRCC3P46736 316 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 EPHB4P54760 987 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 SLC8A3P57103 927 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 TSPY1Q01534 308 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 PLCB3Q01970 1234 aa16.21■□□□□ 0.19
SS18-206ENST00000577572 C1QBPQ07021 282 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 MRPL58Q14197 206 aaKnown RBP16.21■□□□□ 0.19
SS18-206ENST00000577572 IFI16Q16666 785 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms