RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GET4Q7L5D6 327 aaPredicted RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 MOGAT3Q86VF5 341 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 FANCBQ8NB91 859 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 C3orf20Q8ND61 904 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 GIMAP7Q8NHV1 300 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 STYXQ8WUJ0 223 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 RUBCNQ92622 972 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 PAWRQ96IZ0 340 aaKnown RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 CLPTM1LQ96KA5 538 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 MSLNLQ96KJ4 702 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 VRK1Q99986 396 aaPredicted RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 C7orf25Q9BPX7 421 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 PYM1Q9BRP8 204 aaKnown RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 GREM2Q9H772 168 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 SH3GLB2Q9NR46 395 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 PNPOQ9NVS9 261 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 ZSWIM5Q9P217 1185 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 COL20A1Q9P218 1284 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 ARHGAP28Q9P2N2 729 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 AASSQ9UDR5 926 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 SCOCQ9UIL1 159 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 CNOT7Q9UIV1 285 aaKnown RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 PCDHA6Q9UN73 950 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 MAN2B2Q9Y2E5 1009 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 NUB1Q9Y5A7 615 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 ATRNL1Q5VV63 1379 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 FAM186AA6NE01 2351 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 RIF1Q5UIP0 2472 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 FAM234BA2RU67 622 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 MANSC4A6NHS7 340 aaPredicted RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 CYSRT1A8MQ03 144 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 UBE2Q2LH0YL09 131 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 GOLGA6L22H0YM25 854 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 H3BS24 57 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 PODXLO00592 558 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 DDX58O95786 925 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 RPLP2P05387 115 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 BMP3P12645 472 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 HNRNPLP14866 589 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS53-219ENST00000576019 RPS6KB1P23443 525 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 MC4RP32245 332 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 KCNQ1P51787 676 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 NR1H2P55055 460 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 PRMT2P55345 433 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 RPS16P62249 146 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 TEKQ02763 1124 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 GRIN1Q05586 938 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 FBXO38Q6PIJ6 1188 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 GAREM2Q75VX8 874 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 KANSL1Q7Z3B3 1105 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 RIOX2Q8IUF8 465 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 CPOQ8IVL8 374 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 SDR16C5Q8N3Y7 309 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 LSMEM1Q8N8F7 131 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 IQCDQ96DY2 449 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 RRP36Q96EU6 259 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 TRIM11Q96F44 468 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 FAM46AQ96IP4 442 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 RSRC1Q96IZ7 334 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 MAELQ96JY0 434 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 FCRL2Q96LA5 508 aaPredicted RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 TTC14Q96N46 770 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 SAMD11Q96NU1 681 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 MTG2Q9H4K7 406 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 AKTIPQ9H8T0 292 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 OLA1Q9NTK5 396 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS53-219ENST00000576019 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 KIF17Q9P2E2 1029 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 MYOTQ9UBF9 498 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 AFF4Q9UHB7 1163 aaKnown RBP6.54□□□□□ -1.36
VPS53-219ENST00000576019 SLC13A4Q9UKG4 626 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 ASB1Q9Y576 335 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 ZSWIM8A7E2V4 1837 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 ZNF462Q96JM2 2506 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 BPTFQ12830 3046 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 DMXL1Q9Y485 3027 aa6.54□□□□□ -1.36
VPS53-219ENST00000576019 ACOT7O00154 380 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 HOXC11O43248 304 aaPredicted RBP6.53□□□□□ -1.36
VPS53-219ENST00000576019 AHCYL1O43865 530 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 MYL4P12829 197 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 TACR1P25103 407 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 HOXD12P35452 270 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 DCAF7P61962 342 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 ROM1Q03395 351 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 MGAT2Q10469 447 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 SEPT2Q15019 361 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 CCNG2Q16589 344 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 AAK1Q2M2I8 961 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 GAB4Q2WGN9 574 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 KHDC1Q4VXA5 237 aaKnown RBP6.53□□□□□ -1.36
VPS53-219ENST00000576019 EMC4Q5J8M3 183 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 SLC51AQ86UW1 340 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 ADGRG2Q8IZP9 1017 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 TMEM130Q8N3G9 435 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 LZTR1Q8N653 840 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 ANKRD52Q8NB46 1076 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 PRSS33Q8NF86 280 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 ADAMTS18Q8TE60 1221 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms