RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C6orf118Q5T5N4 469 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 CC2D1AQ6P1N0 951 aaPredicted RBP17.8■□□□□ 0.44
VPS53-218ENST00000575207 CASC1Q6TDU7 716 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 PPP4R3CPQ6ZMV5 832 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 SPRYD3Q8NCJ5 442 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 RIN3Q8TB24 985 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 USP13Q92995 863 aaPredicted RBP17.8■□□□□ 0.44
VPS53-218ENST00000575207 PRIMPOLQ96LW4 560 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 ZMYND12Q9H0C1 365 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 KIF9Q9HAQ2 790 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 IL21Q9HBE4 155 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 BCCIPQ9P287 314 aaKnown RBP eCLIP17.8■□□□□ 0.44
VPS53-218ENST00000575207 SRPK3Q9UPE1 567 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 PCDHGB2Q9Y5G2 931 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 SLC12A7Q9Y666 1083 aa17.8■□□□□ 0.44
VPS53-218ENST00000575207 TERTO14746 1132 aaKnown RBP17.79■□□□□ 0.44
VPS53-218ENST00000575207 FLRT2O43155 660 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 MARCH6O60337 910 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 CDC25CP30307 473 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 KCNH2Q12809 1159 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 SGMS1Q86VZ5 419 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 ASAP3Q8TDY4 903 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 RHBDD1Q8TEB9 315 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 TRIM4Q9C037 500 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 TM7SF3Q9NS93 570 aa17.79■□□□□ 0.44
VPS53-218ENST00000575207 WRAP73Q9P2S5 460 aaPredicted RBP17.79■□□□□ 0.44
VPS53-218ENST00000575207 TNFSF14O43557 240 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 PRC1O43663 620 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 CHRM1P11229 460 aaPredicted RBP17.78■□□□□ 0.44
VPS53-218ENST00000575207 USP11P51784 963 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 SOX4Q06945 474 aaPredicted RBP17.78■□□□□ 0.44
VPS53-218ENST00000575207 HSF5Q4G112 596 aaPredicted RBP17.78■□□□□ 0.44
VPS53-218ENST00000575207 ITIH5Q86UX2 942 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 TRIML1Q8N9V2 468 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 HMGB4Q8WW32 186 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 TMEM176AQ96HP8 235 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 TMEM87BQ96K49 555 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 SUSD3Q96L08 255 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 NRSN2Q9GZP1 204 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 PDZD7Q9H5P4 517 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 TDP1Q9NUW8 608 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 AK5Q9Y6K8 562 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 KNL1Q8NG31 2342 aa17.78■□□□□ 0.44
VPS53-218ENST00000575207 SGK1O00141 431 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 PODXLO00592 558 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 N4BP3O15049 544 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 GNSP15586 552 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 ARL2P36404 184 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 AVPR1AP37288 418 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 RIPPLY3P57055 190 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 BFSP1Q12934 665 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 MYO1EQ12965 1108 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 Q4G0T1 1027 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 C4orf17Q53FE4 359 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 DHRS13Q6UX07 377 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 NOSTRINQ8IVI9 506 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 IL17RCQ8NAC3 791 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 TXNDC5Q8NBS9 432 aaKnown RBP17.77■□□□□ 0.44
VPS53-218ENST00000575207 APPL2Q8NEU8 664 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 HSPA12BQ96MM6 686 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 PGLYRP2Q96PD5 576 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 IL21RQ9HBE5 538 aa17.77■□□□□ 0.44
VPS53-218ENST00000575207 PRMT7Q9NVM4 692 aaPredicted RBP17.77■□□□□ 0.44
VPS53-218ENST00000575207 CCER2I3L3R5 266 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 EML1O00423 815 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 YWHABP31946 246 aaKnown RBP17.76■□□□□ 0.43
VPS53-218ENST00000575207 HNRNPUQ00839 825 aaKnown RBP eCLIP17.76■□□□□ 0.43
VPS53-218ENST00000575207 CENPPQ6IPU0 288 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 MICU3Q86XE3 530 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 C4orf19Q8IY42 314 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 ALLCQ8N6M5 410 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 OSCP1Q8WVF1 389 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 DDX12PQ92771 950 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 ZNF419Q96HQ0 510 aaPredicted RBP17.76■□□□□ 0.43
VPS53-218ENST00000575207 C6orf50Q9HD87 102 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 RBM28Q9NW13 759 aaKnown RBP17.76■□□□□ 0.43
VPS53-218ENST00000575207 GDAQ9Y2T3 454 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 NID2Q14112 1375 aa17.76■□□□□ 0.43
VPS53-218ENST00000575207 BSNQ9UPA5 3926 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 TTLL13PA6NNM8 815 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 CILPO75339 1184 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 P4HBP07237 508 aaKnown RBP17.75■□□□□ 0.43
VPS53-218ENST00000575207 GLRA2P23416 452 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 OPRD1P41143 372 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 UCNP55089 124 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 CCDC173Q0VFZ6 552 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 GPR17Q13304 367 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 ZNF268Q14587 947 aaPredicted RBP17.75■□□□□ 0.43
VPS53-218ENST00000575207 FAM187BQ17R55 369 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 OTUD6AQ7L8S5 288 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 PGBD3Q8N328 593 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 OXER1Q8TDS5 423 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 ATP2A3Q93084 1043 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 GCNAQ96QF7 691 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 OXCT2Q9BYC2 517 aaPredicted RBP17.75■□□□□ 0.43
VPS53-218ENST00000575207 GAREM1Q9H706 876 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 FNDC3AQ9Y2H6 1198 aaKnown RBP17.75■□□□□ 0.43
VPS53-218ENST00000575207 SLC27A5Q9Y2P5 690 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 NUB1Q9Y5A7 615 aa17.75■□□□□ 0.43
VPS53-218ENST00000575207 TRIP11Q15643 1979 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms