RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ACRP10323 421 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 ODC1P11926 461 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 UNGP13051 313 aaPredicted RBP14.55□□□□□ -0.08
CCDC40-209ENST00000573474 ACOT1Q86TX2 421 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 OSTM1Q86WC4 334 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 METTL23Q86XA0 190 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 C7orf61Q8IZ16 206 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 LRRC43Q8N309 656 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 BADQ92934 168 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 CYFIP2Q96F07 1278 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 TNIP3Q96KP6 325 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 SUSD3Q96L08 255 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 HTATIP2Q9BUP3 242 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 COLEC11Q9BWP8 271 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 ZNF518BQ9C0D4 1074 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 LHX5Q9H2C1 402 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 MYO1AQ9UBC5 1043 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 DNAJB4Q9UDY4 337 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 TRIM10Q9UDY6 481 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 CEP83Q9Y592 693 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 DUSP10Q9Y6W6 482 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 TDRD15B5MCY1 1934 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 TRAPPC3O43617 180 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 TADA2AO75478 443 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 KIF4AO95239 1232 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 FGBP02675 491 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 CYP11A1P05108 521 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 TNNT1P13805 278 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 TYMPP19971 482 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 LMO2P25791 158 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 CDH5P33151 784 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 NSFP46459 744 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 BRCC3P46736 316 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 GNG11P61952 73 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 WDR5P61964 334 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 ETF1P62495 437 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 NOMO3P69849 1222 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 CENPCQ03188 943 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 FPGSQ05932 587 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 PAN2Q504Q3 1202 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 NAA35Q5VZE5 725 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 LCLAT1Q6UWP7 414 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 DNAAF5Q86Y56 855 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 PASD1Q8IV76 773 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 RNF10Q8N5U6 811 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 TMEM35BQ8NCS4 154 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 CPA5Q8WXQ8 436 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 CTNNBL1Q8WYA6 563 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 SECISBP2LQ93073 1101 aaKnown RBP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 PCDHB8Q9UN66 801 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.54□□□□□ -0.08
CCDC40-209ENST00000573474 FAN1Q9Y2M0 1017 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 NME7Q9Y5B8 376 aa14.54□□□□□ -0.08
CCDC40-209ENST00000573474 MICAL3Q7RTP6 2002 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 A0A0A6YYK5 440 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 MACROD2A1Z1Q3 448 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 I3L4J1 428 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 O00370 1275 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 NRP1O14786 923 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 MICAL2O94851 1124 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 ITGB1P05556 798 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 SSTR3P32745 418 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 SLC11A1P49279 550 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 GPC5P78333 572 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 IFI16Q16666 785 aaKnown RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 ARHGAP17Q68EM7 881 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 DENND1BQ6P3S1 775 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 C16orf59Q7L2K0 433 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 PHF13Q86YI8 300 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 HASPINQ8TF76 798 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 TRIM11Q96F44 468 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 VCPIP1Q96JH7 1222 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 NOX5Q96PH1 765 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 IRX2Q9BZI1 471 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 DPEP3Q9H4B8 488 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 DDX43Q9NXZ2 648 aaKnown RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 PRG3Q9Y2Y8 225 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-209ENST00000573474 PAXBP1Q9Y5B6 917 aa14.53□□□□□ -0.08
CCDC40-209ENST00000573474 NCANO14594 1321 aa14.52□□□□□ -0.08
CCDC40-209ENST00000573474 F8W810 466 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 GALTP07902 379 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 MYBL1P10243 752 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 PTPN1P18031 435 aaKnown RBP14.52□□□□□ -0.09
CCDC40-209ENST00000573474 ABCB4P21439 1286 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 PCSK1P29120 753 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 DEFB103AP81534 67 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 C1QBPQ07021 282 aaKnown RBP14.52□□□□□ -0.09
CCDC40-209ENST00000573474 TCEAL1Q15170 157 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF569Q5MCW4 686 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 DNTTIP2Q5QJE6 756 aaKnown RBP14.52□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF365Q70YC5 407 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 OTOP2Q7RTS6 562 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 MCOLN2Q8IZK6 566 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 THEM5Q8N1Q8 247 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 WDTC1Q8N5D0 677 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 C12orf29Q8N999 325 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 B3GALNT2Q8NCR0 500 aa14.52□□□□□ -0.09
CCDC40-209ENST00000573474 ZNF689Q96CS4 500 aaPredicted RBP14.52□□□□□ -0.09
CCDC40-209ENST00000573474 CALR3Q96L12 384 aaKnown RBP14.52□□□□□ -0.09
CCDC40-209ENST00000573474 THAP2Q9H0W7 228 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms