RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FOXC1Q12948 553 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 MYO1EQ12965 1108 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 MYBPC2Q14324 1141 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 KNOP1Q1ED39 458 aaKnown RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 BMT2Q1RMZ1 405 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PABPC1LQ4VXU2 614 aaKnown RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 CYP4A22Q5TCH4 519 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 EPM2AIP1Q7L775 607 aaPredicted RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 TCEAL8Q8IYN2 117 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 FBXL6Q8N531 539 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 FAM160A2Q8N612 972 aaPredicted RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 LRRC52Q8N7C0 313 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 XXYLT1Q8NBI6 393 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 SCFD1Q8WVM8 642 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 NXPE3Q969Y0 559 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 PBXIP1Q96AQ6 731 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 CHAMP1Q96JM3 812 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 ZNF512Q96ME7 567 aaPredicted RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 FNBP1Q96RU3 617 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 GDPD2Q9HCC8 539 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 EPS15L1Q9UBC2 864 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 AGAP1Q9UPQ3 857 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 MRPS23Q9Y3D9 190 aaKnown RBP8.73□□□□□ -1.01
VPS53-214ENST00000572607 INSL5Q9Y5Q6 135 aa8.73□□□□□ -1.01
VPS53-214ENST00000572607 FAM237AA0A1B0GTK4 181 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 KPNA7A9QM74 516 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 ZNF197O14709 1029 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 SPTLC1O15269 473 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 EXOC3O60645 756 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 HUS1O60921 280 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 CLSTN1O94985 981 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 RPN1P04843 607 aaKnown RBP8.72□□□□□ -1.01
VPS53-214ENST00000572607 ASGR2P07307 311 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 LAMP2P13473 410 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 PTPN2P17706 415 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 TNNI1P19237 187 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 ALDH1A3P47895 512 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 NTHL1P78549 312 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 MYL7Q01449 175 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 EHHADHQ08426 723 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 GPR17Q13304 367 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 TDGQ13569 410 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 SNRNP35Q16560 246 aaKnown RBP8.72□□□□□ -1.01
VPS53-214ENST00000572607 DUOXA2Q1HG44 320 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 KRBA2Q6ZNG9 492 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 MTSS1LQ765P7 747 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 PDZD4Q76G19 769 aaPredicted RBP8.72□□□□□ -1.01
VPS53-214ENST00000572607 ASCL5Q7RTU5 278 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 CBWD2Q8IUF1 395 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 WDR49Q8IV35 697 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 DCP1BQ8IZD4 617 aaKnown RBP8.72□□□□□ -1.01
VPS53-214ENST00000572607 TMEM130Q8N3G9 435 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 CSGALNACT2Q8N6G5 542 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 LEMD2Q8NC56 503 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 FEZF2Q8TBJ5 459 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 PGLYRP2Q96PD5 576 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 MYADMQ96S97 322 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 MTMR12Q9C0I1 747 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 MFSD1Q9H3U5 465 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 KCNK12Q9HB15 430 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 PDE11AQ9HCR9 933 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 HOOK1Q9UJC3 728 aaKnown RBP8.72□□□□□ -1.01
VPS53-214ENST00000572607 FBXL21Q9UKT6 434 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 CDH7Q9ULB5 785 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 SLC27A5Q9Y2P5 690 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 GVINP1Q7Z2Y8 2422 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 ZNF292O60281 2723 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 FRYLO94915 3013 aa8.72□□□□□ -1.01
VPS53-214ENST00000572607 CITO14578 2027 aa8.71□□□□□ -1.01
VPS53-214ENST00000572607 PROB1E7EW31 1015 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CLIC2O15247 247 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TGFB1I1O43294 461 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CALUO43852 315 aaPredicted RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 KLRC4O43908 158 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 ZNF202O95125 648 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 SEC24AO95486 1093 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 CYP11A1P05108 521 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 RHOP08100 348 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 OR4Q2P0C623 313 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 DLATP10515 647 aaKnown RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 RFX1P22670 979 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 AVPR2P30518 371 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 HOXD13P35453 343 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TUFMP49411 452 aaKnown RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 EPHB3P54753 998 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TSPY1Q01534 308 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TWF1Q12792 350 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 SMARCB1Q12824 385 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 STK4Q13043 487 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TRPC3Q13507 836 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 VEPH1Q14D04 833 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TAF12Q16514 161 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 LMBRD2Q68DH5 695 aaPredicted RBP8.71□□□□□ -1.02
VPS53-214ENST00000572607 RNF19BQ6ZMZ0 732 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 ITIH5Q86UX2 942 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 C12orf56Q8IXR9 622 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 TMEM86AQ8N2M4 240 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 C1orf127Q8N9H9 656 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 ZSWIM2Q8NEG5 633 aa8.71□□□□□ -1.02
VPS53-214ENST00000572607 FAM200AQ8TCP9 573 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms