RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 FAM205CA6NFA0 338 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 K7EQS6 105 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 PODXLO00592 558 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 N4BP3O15049 544 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 MARCH6O60337 910 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 DKC1O60832 514 aaKnown RBP eCLIP12.3□□□□□ -0.44
CDH3-208ENST00000569036 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 GLRA2P23416 452 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 ALDH1A3P47895 512 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 USP11P51784 963 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 SEMG2Q02383 582 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 GRIK2Q13002 908 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 DUSP4Q13115 394 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 LY6DQ14210 128 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 PDGFRLQ15198 375 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 PFKFB3Q16875 520 aaPredicted RBP12.3□□□□□ -0.44
CDH3-208ENST00000569036 PLEKHG6Q3KR16 790 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 XKR9Q5GH70 373 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 CMTM8Q8IZV2 173 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 ETNPPLQ8TBG4 499 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 USP13Q92995 863 aaPredicted RBP12.3□□□□□ -0.44
CDH3-208ENST00000569036 PRIMPOLQ96LW4 560 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 LRRC2Q9BYS8 371 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 PRDM16Q9HAZ2 1276 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 IL21Q9HBE4 155 aa12.3□□□□□ -0.44
CDH3-208ENST00000569036 NXF1Q9UBU9 619 aaKnown RBP12.3□□□□□ -0.44
CDH3-208ENST00000569036 ZBTB39O15060 712 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SOAT2O75908 522 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 TDP2O95551 362 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 P4HBP07237 508 aaKnown RBP12.29□□□□□ -0.44
CDH3-208ENST00000569036 ARL2P36404 184 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 TLE3Q04726 772 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 RTN1Q16799 776 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 CC2D1AQ6P1N0 951 aaPredicted RBP12.29□□□□□ -0.44
CDH3-208ENST00000569036 APOA5Q6Q788 366 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SGMS1Q86VZ5 419 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SLC41A1Q8IVJ1 513 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 C4orf19Q8IY42 314 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 TTC9BQ8N6N2 239 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SNIP1Q8TAD8 396 aaKnown RBP12.29□□□□□ -0.44
CDH3-208ENST00000569036 HMGB4Q8WW32 186 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 BAP1Q92560 729 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SUSD3Q96L08 255 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 PNMA5Q96PV4 448 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 LXNQ9BS40 222 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 OSBPL3Q9H4L5 887 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 PRMT7Q9NVM4 692 aaPredicted RBP12.29□□□□□ -0.44
CDH3-208ENST00000569036 KCNK4Q9NYG8 393 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 IL17BQ9UHF5 180 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SLC27A5Q9Y2P5 690 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 CREBBPQ92793 2442 aa12.29□□□□□ -0.44
CDH3-208ENST00000569036 SMIM28A0A1B0GU29 152 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 PTMSP20962 102 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 CDC25CP30307 473 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 RHDQ02161 417 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 BFSP1Q12934 665 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 SLC36A4Q6YBV0 504 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 OTUD6AQ7L8S5 288 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 ITIH5Q86UX2 942 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 ALLCQ8N6M5 410 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 TXNDC5Q8NBS9 432 aaKnown RBP12.28□□□□□ -0.44
CDH3-208ENST00000569036 SPIRE2Q8WWL2 714 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 DDX12PQ92771 950 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 HSPA12BQ96MM6 686 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 GCNAQ96QF7 691 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 CDC6Q99741 560 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 TRIM4Q9C037 500 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 FZD8Q9H461 694 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 KIF9Q9HAQ2 790 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 ANKMY1Q9P2S6 941 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 VAV3Q9UKW4 847 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 NUB1Q9Y5A7 615 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 AHCTF1Q8WYP5 2266 aa12.28□□□□□ -0.44
CDH3-208ENST00000569036 LRRIQ4A6NIV6 560 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 SGK1O00141 431 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 KLF8O95600 359 aaPredicted RBP12.27□□□□□ -0.45
CDH3-208ENST00000569036 CHRM1P11229 460 aaPredicted RBP12.27□□□□□ -0.45
CDH3-208ENST00000569036 GNA11P29992 359 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 AVPR1AP37288 418 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 SCRN1Q12765 414 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 PPP2R5CQ13362 524 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 FAM187BQ17R55 369 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 TMEM132AQ24JP5 1023 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 EEF1DP3Q658K8 133 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 CENPPQ6IPU0 288 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 SYNE3Q6ZMZ3 975 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 PRICKLE2Q7Z3G6 844 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 APPL2Q8NEU8 664 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 SPATA18Q8TC71 538 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 CCDC12Q8WUD4 166 aaPredicted RBP12.27□□□□□ -0.45
CDH3-208ENST00000569036 LPIN3Q9BQK8 851 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 ADPGKQ9BRR6 497 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 ZDHHC5Q9C0B5 715 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 IL21RQ9HBE5 538 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 TDP1Q9NUW8 608 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 USP20Q9Y2K6 914 aa12.27□□□□□ -0.45
CDH3-208ENST00000569036 CABIN1Q9Y6J0 2220 aa12.26□□□□□ -0.45
CDH3-208ENST00000569036 ANK1P16157 1881 aa12.26□□□□□ -0.45
CDH3-208ENST00000569036 CYP3A7-CYP3A51PA0A087WV96 503 aa12.26□□□□□ -0.45
CDH3-208ENST00000569036 TCRBV21S2A2A0A5A6 115 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms