RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	NAP1L4	Q99733	375 aa	Known RBP	12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	PTPRH	Q9HD43	1115 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	CNTN3	Q9P232	1028 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	TUBGCP4	Q9UGJ1	667 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	TBX20	Q9UMR3	447 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	TNFSF13B	Q9Y275	285 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	RAX	Q9Y2V3	346 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	ASB3	Q9Y575	518 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	TRIP11	Q15643	1979 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	NUP205	Q92621	2012 aa		12.83	□□□□□ -0.36
CLK3-222	ENST00000568232	NUP210	Q8TEM1	1887 aa	Predicted RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	ASCC3	Q8N3C0	2202 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232		M0QZQ0	153 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	CPLX1	O14810	134 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	MED24	O75448	989 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	FGF19	O95750	216 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	CYP11B2	P19099	503 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	NMT1	P30419	496 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	STK3	Q13188	491 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	ZNF568	Q3ZCX4	644 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	SEZ6	Q53EL9	994 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	C11orf74	Q86VG3	221 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	RASSF3	Q86WH2	238 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	TTC30A	Q86WT1	665 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	CATSPER3	Q86XQ3	398 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	PNPLA1	Q8N8W4	532 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	MAB21L3	Q8N8X9	362 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	GLIS3	Q8NEA6	775 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	MDGA1	Q8NFP4	955 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	ACD	Q96AP0	544 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	ACAP3	Q96P50	834 aa		12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	ACO2	Q99798	780 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	GTPBP2	Q9BX10	602 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	CCDC86	Q9H6F5	360 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-222	ENST00000568232	CACNA1E	Q15878	2313 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	UPK3BL1	B0FP48	263 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	UPK3BL2	E5RIL1	263 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232		K7ERI5	159 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	WNT7A	O00755	349 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	LARGE1	O95461	756 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	HARS	P12081	509 aa	Known RBP	12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	ATF6	P18850	670 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	HSPA4	P34932	840 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	EFNA5	P52803	228 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	SEC13	P55735	322 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	AMPD2	Q01433	879 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	SPAG1	Q07617	926 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	TOB2	Q14106	344 aa	Predicted RBP	12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	CALCRL	Q16602	461 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	C2orf27A	Q580R0	203 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	ITIH5	Q86UX2	942 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	SYT12	Q8IV01	421 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	OR2I1P	Q8NGU4	316 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	GIPC2	Q8TF65	315 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	KCNB2	Q92953	911 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	CD101	Q93033	1021 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	CRELD1	Q96HD1	420 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	CAMK1G	Q96NX5	476 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	NACC1	Q96RE7	527 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	FNBP1	Q96RU3	617 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	SEPT5	Q99719	369 aa	Predicted RBP	12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	MFRP	Q9BY79	579 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	CACNA2D2	Q9NY47	1150 aa		12.81	□□□□□ -0.36
CLK3-222	ENST00000568232	THADA	Q6YHU6	1953 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	OR6C75	A6NL08	312 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TNFRSF10B	O14763	440 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	CFI	P05156	583 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	HNRNPL	P14866	589 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	CDC25C	P30307	473 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	AVPR1A	P37288	418 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	BFSP1	Q12934	665 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	NR5A1	Q13285	461 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	PPP2R5A	Q15172	486 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	ZNF423	Q2M1K9	1284 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	SLC10A6	Q3KNW5	377 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TXNDC8	Q6A555	127 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	SLC23A3	Q6PIS1	610 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	LPCAT2	Q7L5N7	544 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	USP37	Q86T82	979 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TMEM150A	Q86TG1	271 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	SKAP1	Q86WV1	359 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	FAM177A1	Q8N128	213 aa	Predicted RBP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	HDDC3	Q8N4P3	179 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	CCDC33	Q8N5R6	958 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TTC16	Q8NEE8	873 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	USP33	Q8TEY7	942 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	ZBTB45	Q96K62	511 aa	Predicted RBP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	IFT74	Q96LB3	600 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	CNOT6L	Q96LI5	555 aa	Known RBP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	GCNA	Q96QF7	691 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TARS2	Q9BW92	718 aa	Known RBP	12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	ECT2	Q9H8V3	914 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	TDP1	Q9NUW8	608 aa		12.8	□□□□□ -0.36
CLK3-222	ENST00000568232	ARHGEF35	A5YM69	484 aa		12.79	□□□□□ -0.36
CLK3-222	ENST00000568232	ABLIM1	O14639	778 aa		12.79	□□□□□ -0.36
CLK3-222	ENST00000568232	CD59	P13987	128 aa		12.79	□□□□□ -0.36
CLK3-222	ENST00000568232	ITPKA	P23677	461 aa		12.79	□□□□□ -0.36
CLK3-222	ENST00000568232	ATXN3	P54252	364 aa	Predicted RBP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms