RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 JTBO76095 146 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 CT47B1P0C2W7 299 aaPredicted RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 LPOP22079 712 aaPredicted RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 GCLCP48506 637 aaPredicted RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 KCNJ5P48544 419 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 HK3P52790 923 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 AMPD3Q01432 767 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 LLGL1Q15334 1064 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 RBM20Q5T481 1227 aaKnown RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 ICE2Q659A1 982 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 TAF2Q6P1X5 1199 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 CEP85Q6P2H3 762 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 USP45Q70EL2 814 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 SLC29A4Q7RTT9 530 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 AMIGO2Q86SJ2 522 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 ZBTB46Q86UZ6 589 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 FANCBQ8NB91 859 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 HSPBAP1Q96EW2 488 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 VKORC1Q9BQB6 163 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 SEMA4CQ9C0C4 833 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 TINAGL1Q9GZM7 467 aaPredicted RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 SARS2Q9NP81 518 aaKnown RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 HOMER2Q9NSB8 354 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.72□□□□□ -1.81
VPS35-207ENST00000568191 PNPOQ9NVS9 261 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 SERPINB13Q9UIV8 391 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 COL4A3BPQ9Y5P4 624 aa3.72□□□□□ -1.81
VPS35-207ENST00000568191 WDR27A2RRH5 827 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 MANSC4A6NHS7 340 aaPredicted RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 M0QYG6 137 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 FZD9O00144 591 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 MYO1CO00159 1063 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 SLC16A3O15427 465 aaKnown RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 KIF20AO95235 890 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 HNRNPCP07910 306 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS35-207ENST00000568191 ATXN1LP0C7T5 689 aaKnown RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 AKAP5P24588 427 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 PHKA1P46020 1223 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 HNRNPMP52272 730 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS35-207ENST00000568191 EVA1CP58658 441 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 FOXF2Q12947 444 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 GTF2H3Q13889 308 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 ODF1Q14990 250 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 IQCB1Q15051 598 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 PGS1Q32NB8 556 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 LRCH2Q5VUJ6 765 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 ANKRD16Q6P6B7 361 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 WDR53Q7Z5U6 358 aaPredicted RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 FAM90A1Q86YD7 464 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 SH2D3CQ8N5H7 860 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 SEMA6DQ8NFY4 1073 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 TBC1D5Q92609 795 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 CHMP4CQ96CF2 233 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 LRIG1Q96JA1 1093 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 CDK5RAP3Q96JB5 506 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 MAP3K14Q99558 947 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 C1orf43Q9BWL3 253 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 MRPL46Q9H2W6 279 aaKnown RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 PCDH12Q9NPG4 1184 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 NRIP3Q9NQ35 241 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 SERTAD4Q9NUC0 356 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 ETAA1Q9NY74 926 aa3.71□□□□□ -1.82
VPS35-207ENST00000568191 LUC7L2Q9Y383 392 aaKnown RBP3.71□□□□□ -1.82
VPS35-207ENST00000568191 DNAJC9-AS1A6NH13 148 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 LRRC14BA6NHZ5 514 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 MARCH6O60337 910 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 POU2F2P09086 479 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 XRCC6P12956 609 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS35-207ENST00000568191 TYRP14679 529 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 CHRM3P20309 590 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 CERS1P27544 350 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 TCF15Q12870 199 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 TBC1D25Q3MII6 688 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 LONRF3Q496Y0 759 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 AARS2Q5JTZ9 985 aaKnown RBP3.7□□□□□ -1.82
VPS35-207ENST00000568191 TMEM240Q5SV17 173 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 TMEM108Q6UXF1 575 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 DTX2Q86UW9 622 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 PRR18Q8N4B5 295 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 FAM46DQ8NEK8 389 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 FBXO41Q8TF61 875 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 RFKQ969G6 155 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 NUP88Q99567 741 aaPredicted RBP3.7□□□□□ -1.82
VPS35-207ENST00000568191 SMOC2Q9H3U7 446 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 VSX1Q9NZR4 365 aaPredicted RBP3.7□□□□□ -1.82
VPS35-207ENST00000568191 FLRT1Q9NZU1 646 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 CCNL1Q9UK58 526 aaPredicted RBP3.7□□□□□ -1.82
VPS35-207ENST00000568191 SH2B3Q9UQQ2 575 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 PCDHA1Q9Y5I3 950 aa3.7□□□□□ -1.82
VPS35-207ENST00000568191 LINC01548A6NM66 108 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 TARM1B6A8C7 271 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 RHOP08100 348 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 DLDP09622 509 aaKnown RBP3.69□□□□□ -1.82
VPS35-207ENST00000568191 CYP2C9P11712 490 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 DRD4P21917 467 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 PXNP49023 591 aaPredicted RBP3.69□□□□□ -1.82
VPS35-207ENST00000568191 ZNF81P51508 661 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 PDE1AP54750 535 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 LOXL3P58215 753 aa3.69□□□□□ -1.82
VPS35-207ENST00000568191 E2F2Q14209 437 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms