RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 UBR7Q8N806 425 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 STKLD1Q8NE28 680 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 WHAMMQ8TF30 809 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 SMG7Q92540 1137 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 GBP4Q96PP9 640 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 TWNKQ96RR1 684 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 FNBP1Q96RU3 617 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 ARID3AQ99856 593 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 PHF7Q9BWX1 381 aaPredicted RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 HSD3B7Q9H2F3 369 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 TMEM8AQ9HCN3 771 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 WDR6Q9NNW5 1121 aaKnown RBP10.57□□□□□ -0.72
CLN3-220ENST00000566040 C11orf16Q9NQ32 467 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 PRKAG3Q9UGI9 489 aa10.57□□□□□ -0.72
CLN3-220ENST00000566040 KIAA1549LQ6ZVL6 1849 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 PSMA7O14818 248 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 TACC1O75410 805 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 HNRNPA1P09651 372 aaKnown RBP eCLIP10.56□□□□□ -0.72
CLN3-220ENST00000566040 SP100P23497 879 aaPredicted RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 GPR15P49685 360 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 EPHA5P54756 1037 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 PSMC1P62191 440 aaKnown RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 DUSP4Q13115 394 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 PAK1Q13153 545 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 BMS1Q14692 1282 aaKnown RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 SLC39A12Q504Y0 691 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 PAQR9Q6ZVX9 377 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 HS6ST3Q8IZP7 471 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 TMEM86AQ8N2M4 240 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 ITFG1Q8TB96 612 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 SPATA18Q8TC71 538 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 TCEAL4Q96EI5 215 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 CCDC34Q96HJ3 373 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 CEP63Q96MT8 703 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 SMOC2Q9H3U7 446 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 ZNF334Q9HCZ1 680 aaPredicted RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.56□□□□□ -0.72
CLN3-220ENST00000566040 DDX43Q9NXZ2 648 aaKnown RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 RWDD2AQ9UIY3 292 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 HOOK1Q9UJC3 728 aaKnown RBP10.56□□□□□ -0.72
CLN3-220ENST00000566040 FRMD4BQ9Y2L6 1034 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 SLC27A5Q9Y2P5 690 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 WDFY4Q6ZS81 3184 aa10.56□□□□□ -0.72
CLN3-220ENST00000566040 CETN3O15182 167 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 TADA3O75528 432 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 SRGAP2BP0DMP2 458 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 CPB1P15086 417 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 HMGA1P17096 107 aaKnown RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 RPL13P26373 211 aaKnown RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 ATICP31939 592 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 MTHFRP42898 656 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 MXI1P50539 228 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 AP3M2P53677 418 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 NLRP12P59046 1061 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 NOP14P78316 857 aaKnown RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 INCA1Q0VD86 236 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 UVSSAQ2YD98 709 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 ZNF699Q32M78 642 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 WDR72Q3MJ13 1102 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 PPM1LQ5SGD2 360 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 SCARA5Q6ZMJ2 495 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 DPH6Q7L8W6 267 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 GRASPQ7Z6J2 395 aaPredicted RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 FILIP1Q7Z7B0 1213 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 TMEM150AQ86TG1 271 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 TATDN2Q93075 761 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 SYT15Q9BQS2 421 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 ACBD6Q9BR61 282 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 FUCA2Q9BTY2 467 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 GTPBP4Q9BZE4 634 aaKnown RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 IL21Q9HBE4 155 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 CYP4F11Q9HBI6 524 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 AVENQ9NQS1 362 aaPredicted RBP10.55□□□□□ -0.72
CLN3-220ENST00000566040 GTF3C4Q9UKN8 822 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 DSEQ9UL01 958 aa10.55□□□□□ -0.72
CLN3-220ENST00000566040 PMM2O15305 246 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 HUS1O60921 280 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 HAPLN1P10915 354 aaPredicted RBP10.54□□□□□ -0.72
CLN3-220ENST00000566040 EPB41P11171 864 aaKnown RBP10.54□□□□□ -0.72
CLN3-220ENST00000566040 CEBPBP17676 345 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 FCARP24071 287 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 GTF2H1P32780 548 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 PIK3CAP42336 1068 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 FMO5P49326 533 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 TWF1Q12792 350 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 ORC1Q13415 861 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 BIRC3Q13489 604 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 MIIPQ5JXC2 388 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 LIN9Q5TKA1 542 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 CYP26C1Q6V0L0 522 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 RTL10Q7L3V2 364 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 FRMD5Q7Z6J6 570 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 USP37Q86T82 979 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 NPAS3Q8IXF0 933 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 GJD3Q8N144 294 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 MLKLQ8NB16 471 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 ST13P5Q8NFI4 369 aaPredicted RBP10.54□□□□□ -0.72
CLN3-220ENST00000566040 KAT5Q92993 513 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 MYLPFQ96A32 169 aa10.54□□□□□ -0.72
CLN3-220ENST00000566040 SYAP1Q96A49 352 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms