RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 DCHS1Q96JQ0 3298 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 ATF6P18850 670 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 KPNA1P52294 538 aaPredicted RBP20.18■□□□□ 0.82
CLN3-218ENST00000565688 NRLP54845 237 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 TSPY1Q01534 308 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 ARHGAP29Q52LW3 1261 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 KIAA2013Q8IYS2 634 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 SAAL1Q96ER3 474 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 LPIN3Q9BQK8 851 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 PANK2Q9BZ23 570 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 TMEM206Q9H813 350 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 LMAN1LQ9HAT1 526 aa20.18■□□□□ 0.82
CLN3-218ENST00000565688 RBAKQ9NYW8 714 aaPredicted RBP20.18■□□□□ 0.82
CLN3-218ENST00000565688 STX6O43752 255 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 EXTL3O43909 919 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 LILRB5O75023 590 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 HAPLN1P10915 354 aaPredicted RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 CCNE1P24864 410 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 POLR2BP30876 1174 aaKnown RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 NASPP49321 788 aaPredicted RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 CCR3P51677 355 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 CASP5P51878 434 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 PLCB2Q00722 1185 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 NFE2Q16621 373 aaPredicted RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 STXBP4Q6ZWJ1 553 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 LRRTM3Q86VH5 581 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 CCDC65Q8IXS2 484 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 LRRC52Q8N7C0 313 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 SECISBP2LQ93073 1101 aaKnown RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 LRRC27Q9C0I9 530 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 EPC1Q9H2F5 836 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 ABI2Q9NYB9 513 aaPredicted RBP20.17■□□□□ 0.82
CLN3-218ENST00000565688 ITGA11Q9UKX5 1188 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 PCDHB5Q9Y5E4 795 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 GPR179Q6PRD1 2367 aa20.17■□□□□ 0.82
CLN3-218ENST00000565688 TULP1O00294 542 aaPredicted RBP20.16■□□□□ 0.82
CLN3-218ENST00000565688 KIAA0391O15091 583 aaKnown RBP20.16■□□□□ 0.82
CLN3-218ENST00000565688 ITGB3P05106 788 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 CHRNB1P11230 501 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 LRRC32Q14392 662 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 STK38Q15208 465 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 TSSK4Q6SA08 328 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 RALGPS2Q86X27 583 aaPredicted RBP20.16■□□□□ 0.82
CLN3-218ENST00000565688 TMEM86AQ8N2M4 240 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 C1orf127Q8N9H9 656 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 IL21Q9HBE4 155 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 THG1LQ9NWX6 298 aaKnown RBP20.16■□□□□ 0.82
CLN3-218ENST00000565688 NCDNQ9UBB6 729 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 AGAP1Q9UPQ3 857 aa20.16■□□□□ 0.82
CLN3-218ENST00000565688 TCHHQ07283 1943 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 A0A087X0B3 334 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 SLC38A8A6NNN8 435 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 K7ELQ4 463 aaPredicted RBP20.15■□□□□ 0.82
CLN3-218ENST00000565688 HUS1O60921 280 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 PDCL2Q8N4E4 241 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 CSGALNACT2Q8N6G5 542 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 GPR161Q8N6U8 529 aaKnown RBP20.15■□□□□ 0.82
CLN3-218ENST00000565688 PDILTQ8N807 584 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 SPATA18Q8TC71 538 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 BPIFB1Q8TDL5 484 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 GIPC2Q8TF65 315 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 LEO1Q8WVC0 666 aaPredicted RBP20.15■□□□□ 0.82
CLN3-218ENST00000565688 LRRC3BQ96PB8 259 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 ACBD6Q9BR61 282 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 CBWD1Q9BRT8 395 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 TNMDQ9H2S6 317 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 CUEDC2Q9H467 287 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 GDAP2Q9NXN4 497 aa20.15■□□□□ 0.82
CLN3-218ENST00000565688 NUP210Q8TEM1 1887 aaPredicted RBP20.15■□□□□ 0.82
CLN3-218ENST00000565688 MYBPHLA2RUH7 354 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 SOBPA7XYQ1 873 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 SPECC1L-ADORA2AF8WAN1 911 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 TDGF1P13385 188 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 DDX6P26196 483 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-218ENST00000565688 WNT7BP56706 349 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 RBP5P82980 135 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 CYP4F8P98187 520 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 MYL7Q01449 175 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 GPIHBP1Q8IV16 184 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 GPD1LQ8N335 351 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 DCLK2Q8N568 766 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 CELF5Q8N6W0 485 aaKnown RBP20.14■□□□□ 0.81
CLN3-218ENST00000565688 LINC00301Q8NCQ3 95 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 ZSWIM2Q8NEG5 633 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 ABCB6Q9NP58 842 aa20.14■□□□□ 0.81
CLN3-218ENST00000565688 SMG5Q9UPR3 1016 aaKnown RBP20.14■□□□□ 0.81
CLN3-218ENST00000565688 R3HCC1Q9Y3T6 440 aaKnown RBP20.14■□□□□ 0.81
CLN3-218ENST00000565688 CEP250Q9BV73 2442 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 GOLGA8IPA6NC78 632 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 GOLGA8JA6NMD2 632 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 SPTLC2O15270 562 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 PRPF6O94906 941 aaKnown RBP20.13■□□□□ 0.81
CLN3-218ENST00000565688 PRAMEF12O95522 483 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 TMEM191BP0C7N4 346 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CSH1P0DML2 217 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CSH2P0DML3 217 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CTHP32929 405 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CXCL12P48061 93 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 CDR1P51861 262 aa20.13■□□□□ 0.81
CLN3-218ENST00000565688 AMPD3Q01432 767 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms