RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TPRG1Q6ZUI0 275 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 STXBP4Q6ZWJ1 553 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 UNC13DQ70J99 1090 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 GPIHBP1Q8IV16 184 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 GRAMD1CQ8IYS0 662 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 PDCL2Q8N4E4 241 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 CSGALNACT2Q8N6G5 542 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 LRRC52Q8N7C0 313 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 OR5B17Q8NGF7 314 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 CACTINQ8WUQ7 758 aaKnown RBP11.66□□□□□ -0.54
VPS39-208ENST00000564994 SCFD1Q8WVM8 642 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 SEPT5Q99719 369 aaPredicted RBP11.66□□□□□ -0.54
VPS39-208ENST00000564994 IL21Q9HBE4 155 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 LTB4R2Q9NPC1 389 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 INTS13Q9NVM9 706 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 HSPBP1Q9NZL4 362 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ITGA11Q9UKX5 1188 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ZDHHC9Q9Y397 364 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ASB3Q9Y575 518 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 PTPRDP23468 1912 aa11.66□□□□□ -0.54
VPS39-208ENST00000564994 ANAPC1Q9H1A4 1944 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 PRR23AA6NEV1 266 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 ZNF233A6NK53 670 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 FAM170BA6NMN3 283 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 HEPACAM2A8MVW5 462 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 KIAA0391O15091 583 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 HCRTO43612 131 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 KRT19P08727 400 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 HAPLN1P10915 354 aaPredicted RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 PSMC3P17980 439 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 ACAT1P24752 427 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 TARSP26639 723 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 GABRR2P28476 465 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 GDI1P31150 447 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 AFMP43652 599 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 TUFMP49411 452 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 BFSP1Q12934 665 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 FZD5Q13467 585 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 UBXN2BQ14CS0 331 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 CCDC142Q17RM4 750 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 OSTM1Q86WC4 334 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 NELFCDQ8IXH7 590 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 MAML2Q8IZL2 1156 aaPredicted RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 SPPL2BQ8TCT7 592 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 GIPC2Q8TF65 315 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 C2orf15Q8WU43 125 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 DNASE1L2Q92874 299 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 LRRC3BQ96PB8 259 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 PKMYT1Q99640 499 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 TRMT61BQ9BVS5 477 aaKnown RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 GPR88Q9GZN0 384 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 SLITRK6Q9H5Y7 841 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 BRD9Q9H8M2 597 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 MAGEF1Q9HAY2 307 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 AGPAT3Q9NRZ7 376 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 GDAP2Q9NXN4 497 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 ABI2Q9NYB9 513 aaPredicted RBP11.65□□□□□ -0.54
VPS39-208ENST00000564994 FAM13BQ9NYF5 915 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 SERTAD1Q9UHV2 236 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 CFAP45Q9UL16 551 aa11.65□□□□□ -0.54
VPS39-208ENST00000564994 OTOGLQ3ZCN5 2332 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 ARNTLO00327 626 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 CLIC2O15247 247 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 KLRC4O43908 158 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 TMEM191BP0C7N4 346 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 GPR15P49685 360 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 RBP5P82980 135 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 CYP4F8P98187 520 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 SMARCB1Q12824 385 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 BMT2Q1RMZ1 405 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 SOWAHAQ2M3V2 549 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 ITIH5Q86UX2 942 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 ARID3BQ8IVW6 561 aaPredicted RBP11.64□□□□□ -0.55
VPS39-208ENST00000564994 C1orf210Q8IVY1 113 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 MFSD6LQ8IWD5 586 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 DCP1BQ8IZD4 617 aaKnown RBP11.64□□□□□ -0.55
VPS39-208ENST00000564994 ZNF687Q8N1G0 1237 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 RDH13Q8NBN7 331 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 STKLD1Q8NE28 680 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 FAM200AQ8TCP9 573 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 DEPDC1BQ8WUY9 529 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 IRF7Q92985 503 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 ACBD6Q9BR61 282 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 PI4K2AQ9BTU6 479 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 OSBPL6Q9BZF3 934 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 GZF1Q9H116 711 aaPredicted RBP11.64□□□□□ -0.55
VPS39-208ENST00000564994 ATXN3LQ9H3M9 355 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 SLC39A2Q9NP94 309 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 TRPV5Q9NQA5 729 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 DDX43Q9NXZ2 648 aaKnown RBP11.64□□□□□ -0.55
VPS39-208ENST00000564994 SNX9Q9Y5X1 595 aa11.64□□□□□ -0.55
VPS39-208ENST00000564994 UBE4BO95155 1302 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 PVALEFA0A1B0GWK0 134 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 GABRDO14764 452 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 ACTN4O43707 911 aaKnown RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 HUS1O60921 280 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 PRAMEF12O95522 483 aa11.63□□□□□ -0.55
VPS39-208ENST00000564994 CST3P01034 146 aaPredicted RBP11.63□□□□□ -0.55
VPS39-208ENST00000564994 SP9P0CG40 484 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms