RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLC4A11Q8NBS3 891 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 MSANTD4Q8NCY6 345 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 SLC20A1Q8WUM9 679 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 HEXIM2Q96MH2 286 aaKnown RBP13.64□□□□□ -0.23
CLK3-214ENST00000564096 OXCT2Q9BYC2 517 aaPredicted RBP13.64□□□□□ -0.23
CLK3-214ENST00000564096 ELOVL4Q9GZR5 314 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 CWH43Q9H720 699 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 DDX43Q9NXZ2 648 aaKnown RBP13.64□□□□□ -0.23
CLK3-214ENST00000564096 CDH9Q9ULB4 789 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 PCDHB12Q9Y5F1 795 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 EPN1Q9Y6I3 576 aaPredicted RBP13.64□□□□□ -0.23
CLK3-214ENST00000564096 ATP8B3O60423 1300 aa13.64□□□□□ -0.23
CLK3-214ENST00000564096 GOLGA6L9A6NEM1 432 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 I3L4J1 428 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 GABRDO14764 452 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 BRD2P25440 801 aaKnown RBP13.63□□□□□ -0.23
CLK3-214ENST00000564096 SLC8A3P57103 927 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 GFPT1Q06210 699 aaPredicted RBP13.63□□□□□ -0.23
CLK3-214ENST00000564096 MAPRE1Q15691 268 aaKnown RBP13.63□□□□□ -0.23
CLK3-214ENST00000564096 RASIP1Q5U651 963 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 KIAA1328Q86T90 577 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 GLYCTKQ8IVS8 523 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 COLGALT1Q8NBJ5 622 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 B3GALNT2Q8NCR0 500 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 WHAMMQ8TF30 809 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 IGSF21Q96ID5 467 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 NOX5Q96PH1 765 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 TWNKQ96RR1 684 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 SYT15Q9BQS2 421 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 TSGA10Q9BZW7 698 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 SPTLC3Q9NUV7 552 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 SPG21Q9NZD8 308 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 HCSTQ9UBK5 93 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 HESX1Q9UBX0 185 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 ADAMTS1Q9UHI8 967 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 TRIP11Q15643 1979 aa13.63□□□□□ -0.23
CLK3-214ENST00000564096 FNDC1Q4ZHG4 1894 aaPredicted RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 H7C4K7 107 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 M0QYV0 167 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 LCA5LO95447 670 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 MMEP08473 750 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 PBX3P40426 434 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 NSFP46459 744 aaKnown RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 FMO1Q01740 532 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 ORC1Q13415 861 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 MTF1Q14872 753 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 ASTE1Q2TB18 679 aaPredicted RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 FAM171A1Q5VUB5 890 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 CD300LGQ6UXG3 332 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 TOGARAM2Q6ZUX3 1019 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 ANKS3Q6ZW76 656 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 ACOT1Q86TX2 421 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 OSTM1Q86WC4 334 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 SLC39A11Q8N1S5 342 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 SP7Q8TDD2 431 aaPredicted RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 TRIM11Q96F44 468 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 ACBD6Q9BR61 282 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 DESI2Q9BSY9 194 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 SYT11Q9BT88 431 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 TTPALQ9BTX7 342 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 UBE2OQ9C0C9 1292 aaKnown RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 PYCARDQ9ULZ3 195 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 PCDHGC3Q9UN70 934 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 TIMM13Q9Y5L4 95 aaPredicted RBP13.62□□□□□ -0.23
CLK3-214ENST00000564096 TSC2P49815 1807 aa13.62□□□□□ -0.23
CLK3-214ENST00000564096 SCN1AP35498 2009 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 A0A087X0T9 212 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 OR6C75A6NL08 312 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 F8W810 466 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 O00370 1275 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 DDX3XO00571 662 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLK3-214ENST00000564096 URODP06132 367 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 FAM228BP0C875 321 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 GZMAP12544 262 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 FGFR3P22607 806 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 TKTP29401 623 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 BCAT1P54687 386 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 PSMC1P62191 440 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 CREMQ03060 361 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 KRT17Q04695 432 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 GOLGA7BQ2TAP0 167 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 USP41Q3LFD5 358 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 INTS6LQ5JSJ4 861 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 VARS2Q5ST30 1063 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 CCDC122Q5T0U0 273 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 ARHGAP17Q68EM7 881 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 KIAA1841Q6NSI8 718 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 ALKBH5Q6P6C2 394 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 CEP57Q86XR8 500 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 DCP1BQ8IZD4 617 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 CRYBG2Q8N1P7 616 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 TMEM35BQ8NCS4 154 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 ACRBPQ8NEB7 543 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 LNX1Q8TBB1 728 aaPredicted RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 IPO4Q8TEX9 1081 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 ZNF606Q8WXB4 792 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 DDX1Q92499 740 aaKnown RBP13.61□□□□□ -0.23
CLK3-214ENST00000564096 HERC2P3Q9BVR0 1158 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 ZNF518BQ9C0D4 1074 aa13.61□□□□□ -0.23
CLK3-214ENST00000564096 MIS12Q9H081 205 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms