RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SPPL3Q8TCT6 385 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 PIK3R5Q8WYR1 880 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 TIFAQ96CG3 184 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 TMEM209Q96SK2 561 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 LPIN3Q9BQK8 851 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 ZBP1Q9H171 429 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 CERS4Q9HA82 394 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 ALG13Q9NP73 1137 aaKnown RBP17.69■□□□□ 0.42
VPS4A-202ENST00000562754 ABHD10Q9NUJ1 306 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 LZTS1Q9Y250 596 aa17.69■□□□□ 0.42
VPS4A-202ENST00000562754 EPOPA6NHQ4 379 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 GRM6O15303 877 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 TBC1D4O60343 1298 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ATP2C2O75185 946 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 PSMC1P62191 440 aaKnown RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 DSG1Q02413 1049 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ARID5AQ03989 594 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ASIC2Q16515 512 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 LRIT3Q3SXY7 679 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 PRPF38BQ5VTL8 546 aaKnown RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 SMYD5Q6GMV2 418 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ZNF280DQ6N043 979 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 RSPO2Q6UXX9 243 aaPredicted RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ACOT1Q86TX2 421 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 LNX1Q8TBB1 728 aaPredicted RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 AUTS2Q8WXX7 1259 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 RIN2Q8WYP3 895 aaPredicted RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 SYN2Q92777 582 aaPredicted RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 SYT15Q9BQS2 421 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 ZSWIM1Q9BR11 485 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 C11orf84Q9BUA3 381 aaPredicted RBP17.68■□□□□ 0.42
VPS4A-202ENST00000562754 NT5C1AQ9BXI3 368 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 SLC28A3Q9HAS3 691 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 CRTAC1Q9NQ79 661 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 AIPL1Q9NZN9 384 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 MTRRQ9UBK8 725 aa17.68■□□□□ 0.42
VPS4A-202ENST00000562754 URODP06132 367 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 PAEPP09466 180 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CTSAP10619 480 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 FERP16591 822 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 HNRNPH3P31942 346 aaKnown RBP17.67■□□□□ 0.42
VPS4A-202ENST00000562754 PSMD5Q16401 504 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CTXN3Q4LDR2 81 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 WDR59Q6PJI9 974 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 ANKS3Q6ZW76 656 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CCDC186Q7Z3E2 898 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 IRF2BP2Q7Z5L9 587 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 SLC47A2Q86VL8 602 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CRYBG2Q8N1P7 616 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 OR8K1Q8NGG5 319 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 EPS8L1Q8TE68 723 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 POF1BQ8WVV4 589 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 TFAP2BQ92481 460 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 TMEM176AQ96HP8 235 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 PKMYT1Q99640 499 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 NUCKS1Q9H1E3 243 aaKnown RBP17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CDH9Q9ULB4 789 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 CHD9Q3L8U1 2897 aa17.67■□□□□ 0.42
VPS4A-202ENST00000562754 PTPRDP23468 1912 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 GOLGA6L6A8MZA4 724 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 H3BNC9 293 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 C2CD2LO14523 706 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 ADAM12O43184 909 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 LILRB3O75022 631 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 OR4Q2P0C623 313 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 RPL17P18621 184 aaKnown RBP17.66■□□□□ 0.42
VPS4A-202ENST00000562754 BRD2P25440 801 aaKnown RBP17.66■□□□□ 0.42
VPS4A-202ENST00000562754 PCSK1P29120 753 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 ERVFC1P60507 584 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 UBE3AQ05086 875 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 GPM6BQ13491 265 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 CAMK1Q14012 370 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 PTPN14Q15678 1187 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 INTS6LQ5JSJ4 861 aaKnown RBP17.66■□□□□ 0.42
VPS4A-202ENST00000562754 HGSNATQ68CP4 663 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 KIAA1841Q6NSI8 718 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 NOP9Q86U38 636 aaKnown RBP17.66■□□□□ 0.42
VPS4A-202ENST00000562754 THEM5Q8N1Q8 247 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 B3GALNT2Q8NCR0 500 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 OLIG1Q8TAK6 271 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 ARNTL2Q8WYA1 636 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 PPP1R9BQ96SB3 815 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 ACBD6Q9BR61 282 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 ZCWPW1Q9H0M4 648 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 STK39Q9UEW8 545 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 NOCTQ9UK39 431 aaKnown RBP17.66■□□□□ 0.42
VPS4A-202ENST00000562754 PCDHGC5Q9Y5F6 944 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 BACE2Q9Y5Z0 518 aa17.66■□□□□ 0.42
VPS4A-202ENST00000562754 OR6C75A6NL08 312 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 H7C4K7 107 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 FSCN2O14926 492 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 CSPG5O95196 566 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 SKILP12757 684 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 CD19P15391 556 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 CYP11B1P15538 503 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 PTPN1P18031 435 aaKnown RBP17.65■□□□□ 0.42
VPS4A-202ENST00000562754 FECHP22830 423 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 GNA15P30679 374 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 PRKCIP41743 596 aa17.65■□□□□ 0.42
VPS4A-202ENST00000562754 GSDMDP57764 484 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms