RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TRPC5Q9UL62 973 aaPredicted RBP11.94□□□□□ -0.5
CUX1-218ENST00000560541 GRID1Q9ULK0 1009 aa11.94□□□□□ -0.5
CUX1-218ENST00000560541 KLRC2P26717 231 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 GCAP28676 217 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 LIG4P49917 911 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ARSEP51690 589 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 IL9RQ01113 521 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 GPS1Q13098 491 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 STAT4Q14765 748 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ANO7Q6IWH7 933 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ZNF449Q6P9G9 518 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NIPA1Q7RTP0 329 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 VSIG1Q86XK7 387 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ANKRD35Q8N283 1001 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ZFAND2BQ8WV99 257 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NDNQ99608 321 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 DNAJC5Q9H3Z4 198 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 KIAA1586Q9HCI6 787 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ANKFY1Q9P2R3 1169 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 CTDP1Q9Y5B0 961 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 USH1CQ9Y6N9 552 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 LUC7L3O95232 432 aaKnown RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 CYP1A1P04798 512 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 RPA3P35244 121 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 JAK3P52333 1124 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NOP14P78316 857 aaKnown RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 PLCB3Q01970 1234 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NFX1Q12986 1120 aaKnown RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 ZNF394Q53GI3 561 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 LIN9Q5TKA1 542 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 TXNRD3NBQ6F5E7 133 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 RSBN1LQ6PCB5 846 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 MFSD7Q6UXD7 560 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 PPP1R21Q6ZMI0 780 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NLRX1Q86UT6 975 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ANKMY2Q8IV38 441 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ZBED8Q8IZ13 594 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 MAML1Q92585 1016 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 FAM81BQ96LP2 452 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 TRABDQ9H4I3 376 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 QTRT2Q9H974 415 aaKnown RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 PXMP2Q9NR77 195 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 HAO1Q9UJM8 370 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 PLA2G6O60733 806 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ASNSP08243 561 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 NOMO3P69849 1222 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 KRT76Q01546 638 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 SPDYE2Q495Y8 402 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 MTERF2Q49AM1 385 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ASRGL1Q7L266 308 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 MOV10L1Q9BXT6 1211 aaKnown RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 BRD8Q9H0E9 1235 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 POLR3FQ9H1D9 316 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 XPNPEP1Q9NQW7 623 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 ANKEF1Q9NU02 776 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 SAE1Q9UBE0 346 aaPredicted RBP11.93□□□□□ -0.5
CUX1-218ENST00000560541 PHTF1Q9UMS5 762 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 RIPK3Q9Y572 518 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 PCDHA10Q9Y5I2 948 aa11.93□□□□□ -0.5
CUX1-218ENST00000560541 A0A1W2PPM1 405 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 WDR91A4D1P6 747 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 PSTPIP1O43586 416 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 TCEA3O75764 348 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 VNN1O95497 513 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 KRT1P04264 644 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 FAM200BP0CF97 657 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 CA4P22748 312 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 GTF2H1P32780 548 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 LACTBP83111 547 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 GAD2Q05329 585 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 ENOSF1Q7L5Y1 443 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 TRABD2AQ86V40 505 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 RNF168Q8IYW5 571 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 ZCCHC9Q8N567 271 aaKnown RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 FBF1Q8TES7 1133 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 CNKSR1Q969H4 720 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 UTP4Q969X6 686 aaKnown RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 TMEM143Q96AN5 459 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 TIPINQ9BVW5 301 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 C12orf65Q9H3J6 166 aaKnown RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 ZWILCHQ9H900 591 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 EURLQ9NYK6 297 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 IVNS1ABPQ9Y6Y0 642 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 F8VP50 259 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 UNC5CO95185 931 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 ALADP13716 330 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 DYNLT1P63172 113 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 CUL2Q13617 745 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 BAATQ14032 418 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 ZACNQ401N2 412 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 KATNAL2Q8IYT4 538 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 RBBP8NLQ8NC74 664 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 ABTB1Q969K4 478 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 TRIM11Q96F44 468 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 FGD4Q96M96 766 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 TMEM121Q9BTD3 319 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 DEFB129Q9H1M3 183 aa11.92□□□□□ -0.5
CUX1-218ENST00000560541 ZNF277Q9NRM2 450 aaPredicted RBP11.92□□□□□ -0.5
CUX1-218ENST00000560541 CHKBQ9Y259 395 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms