RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 FBXO4Q9UKT5 387 aa15.15■□□□□ 0.02
TPM1-223ENST00000560445 SCN1AP35498 2009 aa15.15■□□□□ 0.02
TPM1-223ENST00000560445 ZFHX2Q9C0A1 2572 aaPredicted RBP15.15■□□□□ 0.02
TPM1-223ENST00000560445 A0A1W2PRU2 124 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 PRR23AA6NEV1 266 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 FAM170BA6NMN3 283 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 POLR2DO15514 142 aaKnown RBP15.14■□□□□ 0.01
TPM1-223ENST00000560445 DCNP07585 359 aaKnown RBP15.14■□□□□ 0.01
TPM1-223ENST00000560445 FCARP24071 287 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 GDI1P31150 447 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 CCR2P41597 374 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 ZNF528Q3MIS6 628 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 ARHGAP29Q52LW3 1261 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 SHC4Q6S5L8 630 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 FRMD5Q7Z6J6 570 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 TMC8Q8IU68 726 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 HS6ST3Q8IZP7 471 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 C1orf127Q8N9H9 656 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 SHKBP1Q8TBC3 707 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 CCDC47Q96A33 483 aaKnown RBP15.14■□□□□ 0.01
TPM1-223ENST00000560445 EXOC4Q96A65 974 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 FOXQ1Q9C009 403 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 SPATA6Q9NWH7 488 aaPredicted RBP15.14■□□□□ 0.01
TPM1-223ENST00000560445 ABI2Q9NYB9 513 aaPredicted RBP15.14■□□□□ 0.01
TPM1-223ENST00000560445 EHD2Q9NZN4 543 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 SLC27A5Q9Y2P5 690 aa15.14■□□□□ 0.01
TPM1-223ENST00000560445 CHADO15335 359 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 KIF20AO95235 890 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 CSH1P0DML2 217 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 CSH2P0DML3 217 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 HAPLN1P10915 354 aaPredicted RBP15.13■□□□□ 0.01
TPM1-223ENST00000560445 GABRR2P28476 465 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 LRRC32Q14392 662 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 RESP18Q5W5W9 173 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 C4orf50Q6ZRC1 276 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 ADGRF2Q8IZF7 708 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 PDCL2Q8N4E4 241 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 ZNF507Q8TCN5 953 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 FUBP3Q96I24 572 aaKnown RBP eCLIP15.13■□□□□ 0.01
TPM1-223ENST00000560445 CEP295NLQ96MC4 621 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 PHOX2BQ99453 314 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 FAM126AQ9BYI3 521 aaPredicted RBP15.13■□□□□ 0.01
TPM1-223ENST00000560445 MTMR12Q9C0I1 747 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 DNAJC25Q9H1X3 360 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 PCIF1Q9H4Z3 704 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 C8orf33Q9H7E9 229 aaPredicted RBP15.13■□□□□ 0.01
TPM1-223ENST00000560445 PDE11AQ9HCR9 933 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 INTS13Q9NVM9 706 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 DDX43Q9NXZ2 648 aaKnown RBP15.13■□□□□ 0.01
TPM1-223ENST00000560445 HSPBP1Q9NZL4 362 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 DLGAP2Q9P1A6 1054 aa15.13■□□□□ 0.01
TPM1-223ENST00000560445 FAM186AA6NE01 2351 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 GOLGA8IPA6NC78 632 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 GOLGA8JA6NMD2 632 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 HEPACAM2A8MVW5 462 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 VNN2O95498 520 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 PDE6CP51160 858 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 AP3M2P53677 418 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 KRT85P78386 507 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 AMPD2Q01433 879 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 FCHO2Q0JRZ9 810 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 GRM2Q14416 872 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 SNRNP35Q16560 246 aaKnown RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 INTS6LQ5JSJ4 861 aaKnown RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 GPR158Q5T848 1215 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 FOXD4L5Q5VV16 416 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 VITQ6UXI7 678 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 EPM2AIP1Q7L775 607 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 XXYLT1Q8NBI6 393 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 ST13P5Q8NFI4 369 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 FOXD4L4Q8WXT5 416 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 MRPS31Q92665 395 aaKnown RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 CLDN23Q96B33 292 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 HPDLQ96IR7 371 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 LRRC3Q9BY71 257 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 TASP1Q9H6P5 420 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 KIF9Q9HAQ2 790 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 ZNF334Q9HCZ1 680 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 HEBP1Q9NRV9 189 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 AGPAT3Q9NRZ7 376 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 SNX9Q9Y5X1 595 aa15.12■□□□□ 0.01
TPM1-223ENST00000560445 RIF1Q5UIP0 2472 aaKnown RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 NUP210Q8TEM1 1887 aaPredicted RBP15.12■□□□□ 0.01
TPM1-223ENST00000560445 PTPRZ1P23471 2315 aaPredicted RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 KINO60870 393 aaKnown RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 MOSPD3O75425 235 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 LMNAP02545 664 aaKnown RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 FAM163BP0C2L3 166 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 SLFN14P0C7P3 912 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 TNNI1P19237 187 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 TRIM21P19474 475 aaKnown RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 AVPR1AP37288 418 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 KPNA1P52294 538 aaPredicted RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 NRLP54845 237 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 PSMD2Q13200 908 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 BMT2Q1RMZ1 405 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 CFAP221Q4G0U5 840 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 SPATA2LQ8IUW3 424 aaPredicted RBP15.11■□□□□ 0.01
TPM1-223ENST00000560445 C12orf56Q8IXR9 622 aa15.11■□□□□ 0.01
TPM1-223ENST00000560445 CELF5Q8N6W0 485 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms