RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 PDGFCQ9NRA1 345 aa3.83□□□□□ -1.8
SPG11-222ENST00000560435 TRNAU1APQ9NX07 287 aaKnown RBP3.83□□□□□ -1.8
SPG11-222ENST00000560435 GPR45Q9Y5Y3 372 aa3.83□□□□□ -1.8
SPG11-222ENST00000560435 FAM90A10PA6NDY2 464 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 QSOX1O00391 747 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 LPOP22079 712 aaPredicted RBP3.82□□□□□ -1.8
SPG11-222ENST00000560435 ALDH9A1P49189 494 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 EEFSECP57772 596 aaKnown RBP3.82□□□□□ -1.8
SPG11-222ENST00000560435 RBM20Q5T481 1227 aaKnown RBP3.82□□□□□ -1.8
SPG11-222ENST00000560435 IRF2BP2Q7Z5L9 587 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 CHSY1Q86X52 802 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 NANOGP1Q8N7R0 232 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 NRACQ8N912 160 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 PNLDC1Q8NA58 520 aaKnown RBP3.82□□□□□ -1.8
SPG11-222ENST00000560435 SCAMP4Q969E2 229 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 ZNF277Q9NRM2 450 aaPredicted RBP3.82□□□□□ -1.8
SPG11-222ENST00000560435 ETAA1Q9NY74 926 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 DLL3Q9NYJ7 618 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 INTUQ9ULD6 942 aa3.82□□□□□ -1.8
SPG11-222ENST00000560435 SGTAO43765 313 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 BRINP1O60477 761 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 FGBP02675 491 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 AGXTP21549 392 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 ZNF280AP59817 542 aaPredicted RBP3.81□□□□□ -1.8
SPG11-222ENST00000560435 RAB39AQ14964 217 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 SLC30A10Q6XR72 485 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 MIGA2Q7L4E1 593 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 PDSS2Q86YH6 399 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.81□□□□□ -1.8
SPG11-222ENST00000560435 AHCYL2Q96HN2 611 aaKnown RBP3.81□□□□□ -1.8
SPG11-222ENST00000560435 VCPIP1Q96JH7 1222 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 ZC3H10Q96K80 434 aaKnown RBP3.81□□□□□ -1.8
SPG11-222ENST00000560435 VPS33BQ9H267 617 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 SMOC2Q9H3U7 446 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 ZNF112Q9UJU3 913 aa3.81□□□□□ -1.8
SPG11-222ENST00000560435 FNDC1Q4ZHG4 1894 aaPredicted RBP3.8□□□□□ -1.8
SPG11-222ENST00000560435 WDR17Q8IZU2 1322 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 CYSRT1A8MQ03 144 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 OAZ2O95190 189 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 ITGALP20701 1170 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 CD6P30203 668 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 THBS3P49746 956 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 HTRA4P83105 476 aaPredicted RBP3.8□□□□□ -1.8
SPG11-222ENST00000560435 HOXA4Q00056 320 aaPredicted RBP3.8□□□□□ -1.8
SPG11-222ENST00000560435 PCID2Q5JVF3 399 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 MIS18BP1Q6P0N0 1132 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 TAF2Q6P1X5 1199 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 STRA8Q7Z7C7 330 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 PSD4Q8NDX1 1056 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 COQ8BQ96D53 544 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 MRGPRX4Q96LA9 322 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 SLC2A13Q96QE2 648 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 SERHLQ9NQF3 203 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 SAP30BPQ9UHR5 308 aaKnown RBP3.8□□□□□ -1.8
SPG11-222ENST00000560435 SH2B3Q9UQQ2 575 aa3.8□□□□□ -1.8
SPG11-222ENST00000560435 CHEK2O96017 543 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 SCP2P22307 547 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 CYP2C18P33260 490 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 CYP4F2P78329 520 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 TLE1Q04724 770 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 TRIM72Q6ZMU5 477 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 DTX2Q86UW9 622 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 C16orf52Q8NHV5 167 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 RITA1Q96K30 269 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 DUSP22Q9NRW4 184 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 CALCOCO1Q9P1Z2 691 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 PCDHA13Q9Y5I0 950 aa3.79□□□□□ -1.8
SPG11-222ENST00000560435 NOTCH4Q99466 2003 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 LY6G6EA0A0G2JKS1 128 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 PDHA1P08559 390 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 TMEM191BP0C7N4 346 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 GTF2H3Q13889 308 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 VPS53Q5VIR6 699 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 SHC4Q6S5L8 630 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 NAPRTQ6XQN6 538 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 GADL1Q6ZQY3 521 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 ACRBPQ8NEB7 543 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 CYP2W1Q8TAV3 490 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 HDAC10Q969S8 669 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 FAM118BQ9BPY3 351 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 CNPPD1Q9BV87 410 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 FSD1LQ9BXM9 530 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 RLIMQ9NVW2 624 aa3.78□□□□□ -1.8
SPG11-222ENST00000560435 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.78□□□□□ -1.8
SPG11-222ENST00000560435 MRPL42Q9Y6G3 142 aaKnown RBP3.78□□□□□ -1.8
SPG11-222ENST00000560435 H7C1Q1 480 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 PPM1DO15297 605 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 SLC16A3O15427 465 aaKnown RBP3.77□□□□□ -1.81
SPG11-222ENST00000560435 TLR5O60602 858 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 ATP5F1P24539 256 aaPredicted RBP3.77□□□□□ -1.81
SPG11-222ENST00000560435 TMPRSS15P98073 1019 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 TCF15Q12870 199 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 HABP2Q14520 560 aaPredicted RBP3.77□□□□□ -1.81
SPG11-222ENST00000560435 STAT4Q14765 748 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 CCDC93Q567U6 631 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 MAVSQ7Z434 540 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 PPM1NQ8N819 430 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 LYZL4Q96KX0 146 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 NELL2Q99435 816 aa3.77□□□□□ -1.81
SPG11-222ENST00000560435 MACROD1Q9BQ69 325 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms