RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 HEATR9A2RTY3 570 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SNX17Q15036 470 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 UBE3CQ15386 1083 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 A0A087X0T9 212 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 CCT8L1PA6NM43 557 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SCGNO76038 276 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SNUPNO95149 360 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SNX4O95219 450 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 ITIH2P19823 946 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 GYG1P46976 350 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 TTLL9Q3SXZ7 439 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SLC10A4Q96EP9 437 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 TNIP3Q96KP6 325 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 CATSPERBQ9H7T0 1116 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 BMP10O95393 424 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 LBPP18428 481 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 IREB2P48200 963 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 PGS1Q32NB8 556 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 ZNF560Q96MR9 790 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 AGAP3Q96P47 875 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 BTG4Q9NY30 223 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 WWOXQ9NZC7 414 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 PDS5AQ29RF7 1337 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 SMIM22K7EJ46 135 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 IGF2BP3O00425 579 aaKnown RBP eCLIP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 PRPF3O43395 683 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 STX11O75558 287 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 MSH3P20585 1137 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 OTUD4Q01804 1114 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 IDI1Q13907 227 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 CAMK1Q14012 370 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 LAYNQ6UX15 382 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 MIGA2Q7L4E1 593 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 EEPD1Q7L9B9 569 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 C1orf232A0A0U1RR37 186 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 PABPC1P11940 636 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 LPIN1Q14693 890 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 RASSF6Q6ZTQ3 369 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 MED15Q96RN5 788 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 DDX47Q9H0S4 455 aaKnown RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 TNRQ92752 1358 aa14.4□□□□□ -0.1
CSPG4P12-202ENST00000559989 MTMR1Q13613 665 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 BCS1LQ9Y276 419 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 GCLMP48507 274 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 CHI3L2Q15782 390 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 AGAP9Q5VTM2 703 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ZNF333Q96JL9 665 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ZMYM3Q14202 1370 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 KPNA5O15131 536 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 SNRPAP09012 282 aaKnown RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ATP6V1B2P21281 511 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PIGHQ14442 188 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 DRAP1Q14919 205 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 IL31Q6EBC2 164 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 CCDC36Q8IYA8 594 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 EID3Q8N140 333 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 GPD1LQ8N335 351 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 RFFLQ8WZ73 363 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ZFRQ96KR1 1074 aaKnown RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 RNF112Q9ULX5 631 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PADI4Q9UM07 663 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 POU1F1P28069 291 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 KPNA1P52294 538 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TAF13Q15543 124 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ATG16L2Q8NAA4 619 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 MPP4Q96JB8 637 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PIGSQ96S52 555 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 GPR63Q9BZJ6 419 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ROPN1BQ9BZX4 212 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ROPN1Q9HAT0 212 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 FAM217BQ9NTX9 383 aaPredicted RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TRIM49BA6NDI0 452 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TRIM49D1C9J1S8 452 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 F8VZ95 297 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TM9SF1O15321 606 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 C21orf59P57076 290 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 RHAGQ02094 409 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 CCNIQ14094 377 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 CASP12Q6UXS9 341 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 ZCCHC7Q8N3Z6 543 aaKnown RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 LINC00301Q8NCQ3 95 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 RFT1Q96AA3 541 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 COA7Q96BR5 231 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 NEU2Q9Y3R4 380 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 AP3D1O14617 1153 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 DDHD2O94830 711 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PAICSP22234 425 aaKnown RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 SMCO1Q147U7 214 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TMEM26Q6ZUK4 368 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 SYTL1Q8IYJ3 562 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PHF11Q9UIL8 331 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 UBE2QL1A1L167 161 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 KHDRBS3O75525 346 aaKnown RBP14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 THRAP10827 490 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TGM3Q08188 693 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 DPYDQ12882 1025 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 LONRF1Q17RB8 773 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 TTC23Q5W5X9 447 aa14.39□□□□□ -0.11
CSPG4P12-202ENST00000559989 PROSER1Q86XN7 944 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms