RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TTC39CQ8N584 583 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 RDH13Q8NBN7 331 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 MYRIPQ8NFW9 859 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 SHDQ96IW2 340 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 CEP295NLQ96MC4 621 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 ACBD6Q9BR61 282 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 MTMR12Q9C0I1 747 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 CXCL16Q9H2A7 254 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 SNX25Q9H3E2 840 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 ABCB6Q9NP58 842 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 UXTQ9UBK9 157 aaPredicted RBP9.3□□□□□ -0.92
USP3-208ENST00000558285 LIMD1Q9UGP4 676 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 PCDHB5Q9Y5E4 795 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 SNX9Q9Y5X1 595 aa9.3□□□□□ -0.92
USP3-208ENST00000558285 TCF20Q9UGU0 1960 aaKnown RBP9.3□□□□□ -0.92
USP3-208ENST00000558285 BICDL2A1A5D9 508 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 IKBKBO14920 756 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 CETN3O15182 167 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 CLIC2O15247 247 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 TBC1D4O60343 1298 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 FGFR1OPO95684 399 aaKnown RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 WEE2P0C1S8 567 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 EPB41P11171 864 aaKnown RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 LAMP2P13473 410 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 SP100P23497 879 aaPredicted RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 PSMC2P35998 433 aaKnown RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 PSEN1P49768 467 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 PDE6CP51160 858 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 FAM193AP78312 1265 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 DPYDQ12882 1025 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 STK4Q13043 487 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 EDRF1Q3B7T1 1238 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 CEP135Q66GS9 1140 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 CD300LGQ6UXG3 332 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 BMP8AQ7Z5Y6 402 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 SPATA2LQ8IUW3 424 aaPredicted RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 EFCAB13Q8IY85 973 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 GRAMD1CQ8IYS0 662 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 ADGRF2Q8IZF7 708 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 TMC2Q8TDI7 906 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 HPS3Q969F9 1004 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 ZNF707Q96C28 371 aaPredicted RBP9.29□□□□□ -0.92
USP3-208ENST00000558285 MMS19Q96T76 1030 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 GDPD2Q9HCC8 539 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 TRAF3IP3Q9Y228 551 aa9.29□□□□□ -0.92
USP3-208ENST00000558285 CHD7Q9P2D1 2997 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 TMEM221A6NGB7 291 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 M0R296 226 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 TGFB1I1O43294 461 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 STAU1O95793 577 aaKnown RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 NR2F2P24468 414 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ANXA13P27216 316 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 CDC25CP30307 473 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 GUCY2FP51841 1108 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 UBE2HP62256 183 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 LRRC63Q05C16 580 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 TWF1Q12792 350 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 CETN1Q12798 172 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 SGSM1Q2NKQ1 1148 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 MGAT5BQ3V5L5 792 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ZNF667Q5HYK9 610 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ZNF658Q5TYW1 1059 aaPredicted RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 TRAPPC11Q7Z392 1133 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 FMR1NBQ8N0W7 255 aaPredicted RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 C1orf127Q8N9H9 656 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 EXOC4Q96A65 974 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 PBXIP1Q96AQ6 731 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 FUBP3Q96I24 572 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP3-208ENST00000558285 TNIP3Q96KP6 325 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 SEPT5Q99719 369 aaPredicted RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 CORO1BQ9BR76 489 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 MKNK1Q9BUB5 465 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ZCWPW1Q9H0M4 648 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 SLITRK6Q9H5Y7 841 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 EPHX3Q9H6B9 360 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 DDX43Q9NXZ2 648 aaKnown RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 YIPF1Q9Y548 306 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 TIMM13Q9Y5L4 95 aaPredicted RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 LAMA2P24043 3122 aaKnown RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 ATG2AQ2TAZ0 1938 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 SOBPA7XYQ1 873 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 MEFVO15553 781 aaPredicted RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 ADAM12O43184 909 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 KLRC4O43908 158 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 RHOP08100 348 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 CDK11BP21127 795 aaKnown RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 GTF2H1P32780 548 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ADAM9Q13443 819 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 ZNF699Q32M78 642 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 SLC39A12Q504Y0 691 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 WSCD1Q658N2 575 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 CENPPQ6IPU0 288 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 C1orf228Q6PIY5 440 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 GAS2L3Q86XJ1 694 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 YAF2Q8IY57 180 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 FAM186BQ8IYM0 893 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 TSPYL1Q9H0U9 437 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 KCNK12Q9HB15 430 aa9.28□□□□□ -0.92
USP3-208ENST00000558285 METTL14Q9HCE5 456 aaKnown RBP9.28□□□□□ -0.92
USP3-208ENST00000558285 CD320Q9NPF0 282 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms