RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 LRRD1A4D1F6 860 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 TMEM150BA6NC51 233 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SPDYE2BA6NHP3 402 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 E7ESA3 106 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 WDR46O15213 610 aaKnown RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 NPTXRO95502 500 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SPDYE6P0CI01 402 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 ATF7P17544 494 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 VHLP40337 213 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 PTDSS1P48651 473 aaKnown RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 LIG4P49917 911 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 CCNHP51946 323 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 KLC1Q07866 573 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 KRT72Q14CN4 511 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 CTC1Q2NKJ3 1217 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 TDRD10Q5VZ19 366 aaKnown RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 FAM91A1Q658Y4 838 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 C4orf50Q6ZRC1 276 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 PHLDB2Q86SQ0 1253 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 NLRX1Q86UT6 975 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 CHSY1Q86X52 802 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SUPT20HQ8NEM7 779 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SLC35B2Q8TB61 432 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 PYROXD1Q8WU10 500 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 LPAR1Q92633 364 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 FAM118BQ9BPY3 351 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 BTBD10Q9BSF8 475 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 KIF9Q9HAQ2 790 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SNCAIPQ9Y6H5 919 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 HAUS5O94927 633 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 PIGRP01833 764 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 ASNSP08243 561 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 GM2AP17900 193 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 GJC1P36383 396 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 AP3M2P53677 418 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 FASTKD3Q14CZ7 662 aaKnown RBP17.12■□□□□ 0.33
SHMT2-231ENST00000557433 ZFYVE27Q5T4F4 411 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 ANO7Q6IWH7 933 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 IRGCQ6NXR0 463 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 TMEM270Q6UE05 265 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 ARHGAP24Q8N264 748 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 GPRASP2Q96D09 838 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 VCXQ9H320 206 aa17.12■□□□□ 0.33
SHMT2-231ENST00000557433 TCP10L2B9ZVM9 353 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 AHCYL1O43865 530 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CBX6O95503 412 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CALCAP01258 141 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 KRT10P13645 584 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 OCRLQ01968 901 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 KAZNQ674X7 775 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CIAPIN1Q6FI81 312 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 LLGL2Q6P1M3 1020 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 DNAJC24Q6P3W2 148 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 BANPQ8N9N5 519 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 GLIS1Q8NBF1 620 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 NSL1Q96IY1 281 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 SH2D3AQ9BRG2 576 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 PDCD2LQ9BRP1 358 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 MANSC1Q9H8J5 431 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 NPHS2Q9NP85 383 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF70Q9UC06 446 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-231ENST00000557433 POLIQ9UNA4 740 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 A0A1W2PPM1 405 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 SGK1O00141 431 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 NVLO15381 856 aaKnown RBP17.11■□□□□ 0.33
SHMT2-231ENST00000557433 VNN1O95497 513 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 FESP07332 822 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 LINGO3P0C6S8 592 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 ZSCAN5DPP0CG00 497 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 ATP4AP20648 1035 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CDKN2BP42772 138 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF132P52740 706 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 GPX6P59796 221 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 MUM1Q2TAK8 710 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 C11orf91Q3C1V1 193 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 DAB2IPQ5VWQ8 1189 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 MTDHQ86UE4 582 aaKnown RBP17.11■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF483Q8TF39 744 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-231ENST00000557433 MZB1Q8WU39 189 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CGRRF1Q99675 332 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 SH3GL3Q99963 347 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 SLC24A3Q9HC58 644 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 AGO2Q9UKV8 859 aaKnown RBP17.11■□□□□ 0.33
SHMT2-231ENST00000557433 LRCH1Q9Y2L9 728 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 IVNS1ABPQ9Y6Y0 642 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 CLUHO75153 1309 aa17.11■□□□□ 0.33
SHMT2-231ENST00000557433 IQANK1A0A1B0GTG1 560 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 TCRBV5S1A1TA0A578 114 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 SKAP2O75563 359 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-231ENST00000557433 SPAG6O75602 509 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 PSAPP07602 524 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 SKIP12755 728 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 EIF2AK2P19525 551 aaKnown RBP17.1■□□□□ 0.33
SHMT2-231ENST00000557433 GLRA2P23416 452 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 CBLBQ13191 982 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 ZYXQ15942 572 aaKnown RBP17.1■□□□□ 0.33
SHMT2-231ENST00000557433 MAPK6Q16659 721 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 WDR72Q3MJ13 1102 aa17.1■□□□□ 0.33
SHMT2-231ENST00000557433 TBC1D10BQ4KMP7 808 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-231ENST00000557433 C2CD6Q53TS8 623 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms