RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 APC2O95996 2303 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 GON4LQ3T8J9 2241 aa10.5□□□□□ -0.73
SCFD1-215ENST00000555259 PHLPP2Q6ZVD8 1323 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 STK36Q9NRP7 1315 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 WNT7AO00755 349 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 CDC45O75419 566 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 ATF6P18850 670 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 AVPR1AP37288 418 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 FAM193AP78312 1265 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 BFSP1Q12934 665 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 PSMD2Q13200 908 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 VEPH1Q14D04 833 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 SLC10A6Q3KNW5 377 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 OVOS1Q6IE37 1185 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 ANO7Q6IWH7 933 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 CC2D1AQ6P1N0 951 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-215ENST00000555259 RUFY3Q7L099 469 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 RAB44Q7Z6P3 723 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-215ENST00000555259 KIFAP3Q92845 792 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 CD101Q93033 1021 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 CNOT6LQ96LI5 555 aaKnown RBP10.49□□□□□ -0.73
SCFD1-215ENST00000555259 SEPT5Q99719 369 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-215ENST00000555259 TCHPQ9BT92 498 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 TARS2Q9BW92 718 aaKnown RBP10.49□□□□□ -0.73
SCFD1-215ENST00000555259 TDP1Q9NUW8 608 aa10.49□□□□□ -0.73
SCFD1-215ENST00000555259 KALRNO60229 2985 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TNFRSF10BO14763 440 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 DTNBO60941 627 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 CDKL5O76039 1030 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 HARSP12081 509 aaKnown RBP10.48□□□□□ -0.73
SCFD1-215ENST00000555259 RPA1P27694 616 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 LRPAP1P30533 357 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 KRT2P35908 639 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TUFMP49411 452 aaKnown RBP10.48□□□□□ -0.73
SCFD1-215ENST00000555259 PDGFRLQ15198 375 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ZNF423Q2M1K9 1284 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MPZL3Q6UWV2 235 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TAS1R3Q7RTX0 852 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TMEM150AQ86TG1 271 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 SYT12Q8IV01 421 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MAB21L3Q8N8X9 362 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MDGA1Q8NFP4 955 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TMEM60Q9H2L4 133 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ECT2Q9H8V3 914 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 KIF9Q9HAQ2 790 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TMEM74BQ9NUR3 256 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MBD1Q9UIS9 605 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-215ENST00000555259 PI4KAP42356 2102 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MYO16Q9Y6X6 1858 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 KIAA1549LQ6ZVL6 1849 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ASXL3Q9C0F0 2248 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 EIF4E1BA6NMX2 242 aaKnown RBP10.48□□□□□ -0.73
SCFD1-215ENST00000555259 CCDC169A6NNP5 214 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TYMPP19971 482 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 NMT1P30419 496 aaKnown RBP10.48□□□□□ -0.73
SCFD1-215ENST00000555259 PTGER3P43115 390 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 NPTX2P47972 431 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 PEX3P56589 373 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 SPAG1Q07617 926 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 SCRN1Q12765 414 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MGAT5BQ3V5L5 792 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 SEZ6Q53EL9 994 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ARMCX5Q6P1M9 558 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 SLC23A3Q6PIS1 610 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 DSTYKQ6XUX3 929 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ARMCX6Q7L4S7 300 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 LPCAT2Q7L5N7 544 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 HDDC3Q8N4P3 179 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 CPA6Q8N4T0 437 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 OLIG1Q8TAK6 271 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 USP33Q8TEY7 942 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 TMEM134Q9H6X4 195 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ZSWIM6Q9HCJ5 1215 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 ARHGAP28Q9P2N2 729 aa10.48□□□□□ -0.73
SCFD1-215ENST00000555259 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 DDX6P26196 483 aaKnown RBP eCLIP10.47□□□□□ -0.73
SCFD1-215ENST00000555259 CDR1P51861 262 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 TAF12Q16514 161 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 SLC39A12Q504Y0 691 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 TXNDC8Q6A555 127 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 SKAP1Q86WV1 359 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 TMEFF1Q8IYR6 380 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 OR10T2Q8NGX3 314 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 CCDC26Q8TAB7 109 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 ADAM32Q8TC27 787 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 GIPC2Q8TF65 315 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 HNRNPLLQ8WVV9 542 aaKnown RBP10.47□□□□□ -0.73
SCFD1-215ENST00000555259 RLN3Q8WXF3 142 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 ZBTB45Q96K62 511 aaPredicted RBP10.47□□□□□ -0.73
SCFD1-215ENST00000555259 FNBP1Q96RU3 617 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 BHMT2Q9H2M3 363 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 CCDC86Q9H6F5 360 aaKnown RBP10.47□□□□□ -0.73
SCFD1-215ENST00000555259 BRMS1Q9HCU9 246 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 FSCN3Q9NQT6 498 aa10.47□□□□□ -0.73
SCFD1-215ENST00000555259 TNRC6BQ9UPQ9 1833 aaKnown RBP10.46□□□□□ -0.73
SCFD1-215ENST00000555259 ATXN2Q99700 1313 aaKnown RBP10.46□□□□□ -0.73
SCFD1-215ENST00000555259 F11P03951 625 aa10.46□□□□□ -0.74
SCFD1-215ENST00000555259 CXCL8P10145 99 aa10.46□□□□□ -0.74
SCFD1-215ENST00000555259 P2RY2P41231 377 aa10.46□□□□□ -0.74
SCFD1-215ENST00000555259 ATXN3P54252 364 aaPredicted RBP10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms