RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CD300LGQ6UXG3 332 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 IRF2BP2Q7Z5L9 587 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 DDX53Q86TM3 631 aaKnown RBP15.44■□□□□ 0.06
SHMT2-210ENST00000553950 RNF168Q8IYW5 571 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-210ENST00000553950 B3GALNT2Q8NCR0 500 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 RABGGTAQ92696 567 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 ELMO3Q96BJ8 720 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 SYT15Q9BQS2 421 aa15.44■□□□□ 0.06
SHMT2-210ENST00000553950 C11orf84Q9BUA3 381 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-210ENST00000553950 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.44■□□□□ 0.06
SHMT2-210ENST00000553950 PUF60Q9UHX1 559 aaKnown RBP15.44■□□□□ 0.06
SHMT2-210ENST00000553950 PATJQ8NI35 1801 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 A0A1W2PPC1 479 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 LINC01553A4QN01 128 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 C5orf67F2Z3F1 127 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 RBAK-RBAKDNI3L0D1 243 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 RNF225M0QZC1 329 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 LSM8O95777 96 aaKnown RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 PNMA6AP0CW24 399 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 CD19P15391 556 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 GLUD2P49448 558 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 CDR2Q01850 454 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 MLLT1Q03111 559 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 VARS2Q5ST30 1063 aaKnown RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 E4F1Q66K89 784 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 DCP1BQ8IZD4 617 aaKnown RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 CRYBG2Q8N1P7 616 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 MSANTD4Q8NCY6 345 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 PIK3R5Q8WYR1 880 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 TGS1Q96RS0 853 aaKnown RBP15.43■□□□□ 0.06
SHMT2-210ENST00000553950 PDCL3Q9H2J4 239 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 HAUS4Q9H6D7 363 aa15.43■□□□□ 0.06
SHMT2-210ENST00000553950 NT5C1B-RDH14C9J2C7 533 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 I3L4J1 428 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 AKR1B10O60218 316 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 FGF18O76093 207 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 EFEMP2O95967 443 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 TKTP29401 623 aaKnown RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 CLCN1P35523 988 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 BMPR1AP36894 532 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 PBX3P40426 434 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 SLC8A3P57103 927 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 GOLGA8FQ08AF8 430 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 GOLGA8DPQ0D2H9 430 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 NFE2Q16621 373 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 ZNF394Q53GI3 561 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 INTS6LQ5JSJ4 861 aaKnown RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 HGSNATQ68CP4 663 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 ARHGAP17Q68EM7 881 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 WDR59Q6PJI9 974 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 C4orf50Q6ZRC1 276 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 SLC47A2Q86VL8 602 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 CEP57Q86XR8 500 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 SLC4A11Q8NBS3 891 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 WHAMMQ8TF30 809 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 HEXIM2Q96MH2 286 aaKnown RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 GPR62Q9BZJ7 368 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 ELOVL4Q9GZR5 314 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 NHEJ1Q9H9Q4 299 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 PCDH10Q9P2E7 1040 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 ARHGAP20Q9P2F6 1191 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 HESX1Q9UBX0 185 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 HMGXB4Q9UGU5 601 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 NOCTQ9UK39 431 aaKnown RBP15.42■□□□□ 0.06
SHMT2-210ENST00000553950 PCDHGC3Q9UN70 934 aa15.42■□□□□ 0.06
SHMT2-210ENST00000553950 COL4A4P53420 1690 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 F8W810 466 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 SKILP12757 684 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 TNFAIP3P21580 790 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 KIF11P52732 1056 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 DSG1Q02413 1049 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 SPA17Q15506 151 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 SLC18A3Q16572 532 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 CTXN3Q4LDR2 81 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 C10orf76Q5T2E6 689 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 NOP9Q86U38 636 aaKnown RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 OSTM1Q86WC4 334 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 TMEM173Q86WV6 379 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 TMEM139Q8IV31 216 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 C2orf15Q8WU43 125 aaKnown RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 BCL7CQ8WUZ0 217 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 NOX5Q96PH1 765 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 AGPAT1Q99943 283 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 ZNF518BQ9C0D4 1074 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 MIS12Q9H081 205 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 SEPT11Q9NVA2 429 aaKnown RBP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 MTRRQ9UBK8 725 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHMT2-210ENST00000553950 BACE2Q9Y5Z0 518 aa15.41■□□□□ 0.06
SHMT2-210ENST00000553950 LCHNA4D1U4 455 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CCP110O43303 1012 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 LPXNO60711 386 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 CA3P07451 260 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 LINC00271P0C7V0 271 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 SETSIPP0DME0 302 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 PTPN1P18031 435 aaKnown RBP15.4■□□□□ 0.06
SHMT2-210ENST00000553950 RABGGTBP53611 331 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 BCAT1P54687 386 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 SNX16P57768 344 aa15.4■□□□□ 0.06
SHMT2-210ENST00000553950 KRT83P78385 493 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms