RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TTLL13PA6NNM8 815 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SPOPO43791 374 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 ATG7O95352 703 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 HLA-DRAP01903 254 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 GSTA2P09210 222 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TPP2P29144 1249 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 STX2P32856 288 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 LIG4P49917 911 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 RASSF2P50749 326 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 PSMD6Q15008 389 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 MTFR1Q15390 333 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 DBN1Q16643 649 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 ZACNQ401N2 412 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SEZ6Q53EL9 994 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 VSTM1Q6UX27 236 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SEPT14Q6ZU15 432 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 ECHDC2Q86YB7 292 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 ANKRD42Q8N9B4 389 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 MAGEB18Q96M61 343 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 PCYT2Q99447 389 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 PIDD1Q9HB75 910 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 RPL26L1Q9UNX3 145 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 STYXL1Q9Y6J8 313 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 MROH7Q68CQ1 1323 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 WDR90Q96KV7 1748 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ACO1P21399 889 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 PTDSS1P48651 473 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 POLGP54098 1239 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 MGAT5Q09328 741 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ZRSR2Q15696 482 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 MUM1Q2TAK8 710 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 CCDC137Q6PK04 289 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ARHGEF18Q6ZSZ5 1173 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 FAM13CQ8NE31 585 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ART4Q93070 314 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 CDHR1Q96JP9 859 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 DDX23Q9BUQ8 820 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 TARS2Q9BW92 718 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 IQCGQ9H095 443 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 PORCNQ9H237 461 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 DHX33Q9H6R0 707 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ZNF302Q9NR11 478 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 DLGAP2Q9P1A6 1054 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 UVRAGQ9P2Y5 699 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 SCOCQ9UIL1 159 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 UMODL1Q5DID0 1318 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 LTBP3Q9NS15 1303 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 CLDN3O15551 220 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 DKC1O60832 514 aaKnown RBP eCLIP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ECEL1O95672 775 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 OATP04181 439 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 TNNI1P19237 187 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 RRM1P23921 792 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ARL2P36404 184 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 CYP1B1Q16678 543 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 LONRF1Q17RB8 773 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 ACBD5Q5T8D3 534 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 SEL1L2Q5TEA6 688 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 APOBEC3FQ8IUX4 373 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 MCOLN2Q8IZK6 566 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 GDAP1Q8TB36 358 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 MORC4Q8TE76 937 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 PITPNM3Q9BZ71 974 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 BTBD7Q9P203 1132 aa12.93□□□□□ -0.34
SHMT2-207ENST00000553837 AGO2Q9UKV8 859 aaKnown RBP12.93□□□□□ -0.34
SHMT2-207ENST00000553837 SIP14410 1827 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 GSTTP1A0A1W2PQM5 241 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 LRRIQ4A6NIV6 560 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 ICAM3P32942 547 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 COILP38432 576 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-207ENST00000553837 LONP2Q86WA8 852 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 OR5B17Q8NGF7 314 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 FGD4Q96M96 766 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 MYLK2Q9H1R3 596 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 DCLRE1BQ9H816 532 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 C1orf112Q9NSG2 853 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 HOXC10Q9NYD6 342 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 NKIRAS1Q9NYS0 192 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 FBXO40Q9UH90 709 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 ANAPC7Q9UJX3 599 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 PTPN22Q9Y2R2 807 aa12.92□□□□□ -0.34
SHMT2-207ENST00000553837 POLR2AP24928 1970 aaKnown RBP12.92□□□□□ -0.34
SHMT2-207ENST00000553837 IGKV6D-21A0A0A0MT36 114 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 HGSO14964 777 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 TP73O15350 636 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ZC3H11AO75152 810 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 USP2O75604 605 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 STAM2O75886 525 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 GGPS1O95749 300 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 BRAFP15056 766 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 UBA1P22314 1058 aaKnown RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 RFC5P40937 340 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 POLE2P56282 527 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ENPEPQ07075 957 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 STRN3Q13033 797 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 STXBP2Q15833 593 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 OR52E8Q6IFG1 317 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 CGB2Q6NT52 195 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 TRIM42Q8IWZ5 723 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms