RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ATF2P15336 505 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 CASRP41180 1078 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 MRE11P49959 708 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 CPT1AP50416 773 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 ZNF135P52742 658 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-208ENST00000553278 ACTR2P61160 394 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 CUL4BQ13620 913 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 SLC12A1Q13621 1099 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 ARHGEF7Q14155 803 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 ZNF792Q3KQV3 632 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 TMTC4Q5T4D3 741 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 ATPAF1Q5TC12 328 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-208ENST00000553278 GPATCH11Q8N954 259 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 FLAD1Q8NFF5 587 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 UCMAQ8WVF2 138 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 RAPGEF4Q8WZA2 1011 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 SDCCAG3Q96C92 435 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 COG8Q96MW5 612 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 NELL2Q99435 816 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 BARD1Q99728 777 aaKnown RBP6.61□□□□□ -1.35
SCFD1-208ENST00000553278 MYOCQ99972 504 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 TINAGL1Q9GZM7 467 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-208ENST00000553278 TAF1DQ9H5J8 278 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-208ENST00000553278 SLC23A1Q9UHI7 598 aa6.61□□□□□ -1.35
SCFD1-208ENST00000553278 M0QYG6 137 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CCP110O43303 1012 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 COQ9O75208 318 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 USP1O94782 785 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 GFPT2O94808 682 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 HAUS5O94927 633 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CHEK2O96017 543 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SNRPA1P09661 255 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 PIM1P11309 404 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CYP2C9P11712 490 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 TPH1P17752 444 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SPINK2P20155 84 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 ALDH18A1P54886 795 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NR1H2P55055 460 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 WNT3P56703 355 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NSUN2Q08J23 767 aaKnown RBP eCLIP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 INSCQ1MX18 579 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SLC5A9Q2M3M2 681 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 GAGE13Q4V321 117 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 FAM26FQ5R3K3 315 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 MFSD14BQ5SR56 506 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 GPATCH4Q5T3I0 446 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 FAXCQ5TGI0 409 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 PLAG1Q6DJT9 500 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 MRNIPQ6NTE8 343 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 ZNF529Q6P280 563 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NFXL1Q6ZNB6 911 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NEK10Q6ZWH5 1172 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 LARP4Q71RC2 724 aaKnown RBP eCLIP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SLC44A2Q8IWA5 706 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CCDC28AQ8IWP9 274 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 TCP11L2Q8N4U5 519 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 OR6Y1Q8NGX8 325 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 RSC1A1Q92681 617 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SCAMP4Q969E2 229 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 HVCN1Q96D96 273 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 RRP36Q96EU6 259 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CEP95Q96GE4 821 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 MOGAT1Q96PD6 335 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SERINC2Q96SA4 455 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NUDT16L1Q9BRJ7 211 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CHCHD6Q9BRQ6 235 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 NDC1Q9BTX1 674 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SPATA5L1Q9BVQ7 753 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CPEB1Q9BZB8 566 aaKnown RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 TP63Q9H3D4 680 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-208ENST00000553278 PREBQ9HCU5 417 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 PRDM8Q9NQV8 689 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 HELLSQ9NRZ9 838 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 SIRT5Q9NXA8 310 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 AASSQ9UDR5 926 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 CAPN11Q9UMQ6 739 aa6.6□□□□□ -1.35
SCFD1-208ENST00000553278 ZMYM3Q14202 1370 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 A0A087X0M5 115 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 A0A1B0GX30 115 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SASH1O94885 1247 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 AMHP03971 560 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 TK1P04183 234 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 GYS1P13807 737 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 RPS6KB1P23443 525 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 GZMKP49863 264 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 PNLIPRP1P54315 467 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 PRKAA2P54646 552 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 BPIFB4P59827 614 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SRSF3P84103 164 aaKnown RBP6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SCAPQ12770 1279 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SURF1Q15526 300 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SLC45A4Q5BKX6 768 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 CRB2Q5IJ48 1285 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 FAM160B1Q5W0V3 765 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 RAP1GAP2Q684P5 730 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 ZDHHC24Q6UX98 284 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 SPOCD1Q6ZMY3 1216 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 LDHDQ86WU2 507 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 OR8H2Q8N162 312 aa6.59□□□□□ -1.35
SCFD1-208ENST00000553278 LINC00482Q8N8I6 264 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms