RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RNF149Q8NC42 400 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 TEKT4Q8WW24 435 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MYLIPQ8WY64 445 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 HPS3Q969F9 1004 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 TLCD1Q96CP7 247 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 IFT74Q96LB3 600 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 ELAC2Q9BQ52 826 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 FTHL17Q9BXU8 183 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 GCOM2Q9BZD3 368 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PRDM12Q9H4Q4 367 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 CHCHD3Q9NX63 227 aaKnown RBP8.14□□□□□ -1.11
LIMA1-216ENST00000552909 MTUS1Q9ULD2 1270 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 PPME1Q9Y570 386 aa8.14□□□□□ -1.11
LIMA1-216ENST00000552909 DENND3A2RUS2 1198 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 LINC01553A4QN01 128 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ARHGEF35A5YM69 484 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 C9IYK1 514 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 SART1O43290 800 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 PALMO75781 387 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 RNF8O76064 485 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 UBOX5O94941 541 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 RHOBTB3O94955 611 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 SLC34A2O95436 690 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 EYA4O95677 639 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 FTCDO95954 541 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 KRT18P05783 430 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 VIMP08670 466 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 CHN1P15882 459 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 CYP11B2P19099 503 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 GLRA2P23416 452 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ALDH3A1P30838 453 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 EIF3BP55884 814 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 RNASE9P60153 205 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 CACNB1Q02641 598 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 CAPSQ13938 189 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ARSHQ5FYA8 562 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 FAM102BQ5T8I3 360 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ARMC3Q5W041 872 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 TRIM68Q6AZZ1 485 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 SPATA21Q7Z572 469 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ARHGAP22Q7Z5H3 698 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 TRIM74Q86UV6 250 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 TRIM73Q86UV7 250 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF410Q86VK4 478 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 HOOK3Q86VS8 718 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 EXOC8Q8IYI6 725 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC34Q8IZ02 419 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 BSNDQ8WZ55 320 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 TAF4BQ92750 862 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 KLHL29Q96CT2 875 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 DHTKD1Q96HY7 919 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 YME1L1Q96TA2 773 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 EPAS1Q99814 870 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 GORASP1Q9BQQ3 440 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 RAB17Q9H0T7 212 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 POLR3FQ9H1D9 316 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 LUC7LQ9NQ29 371 aaKnown RBP8.13□□□□□ -1.11
LIMA1-216ENST00000552909 RGS18Q9NS28 235 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 ABCF3Q9NUQ8 709 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 INSL6Q9Y581 213 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 COL4A6Q14031 1691 aa8.13□□□□□ -1.11
LIMA1-216ENST00000552909 PVALEFA0A1B0GWK0 134 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 BICDL2A1A5D9 508 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 F8VZ95 297 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 GAS2O43903 313 aaKnown RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 COQ9O75208 318 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 DGKIO75912 1065 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 WFS1O76024 890 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 KRT16P08779 473 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 MUTP22033 750 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 MSH2P43246 934 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 RANBP1P43487 201 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 GFPT1Q06210 699 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 SF3A3Q12874 501 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 STK4Q13043 487 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ADGRE1Q14246 886 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 LBRQ14739 615 aaKnown RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 MIIPQ5JXC2 388 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 MEI1Q5TIA1 1274 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 UNC13DQ70J99 1090 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 SLC24A5Q71RS6 500 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 TMC3Q7Z5M5 1100 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 KCTD17Q8N5Z5 321 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 GBP7Q8N8V2 638 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 FAM81AQ8TBF8 368 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ARNTL2Q8WYA1 636 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 DNAJC19Q96DA6 116 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 SELENOSQ9BQE4 189 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 C17orf80Q9BSJ5 609 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 RUSC1Q9BVN2 902 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 TRIM4Q9C037 500 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 NEUROG2Q9H2A3 272 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ZHX3Q9H4I2 956 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 RC3H2Q9HBD1 1191 aaKnown RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ADAM22Q9P0K1 906 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 TMEM59LQ9UK28 342 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 STK38LQ9Y2H1 464 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 TMEM265A0A087WTH1 108 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC53A6NM62 1247 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 EIF4E1BA6NMX2 242 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms