RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TMEM86AQ8N2M4 240 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 STK32AQ8WU08 396 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 PPP1R13LQ8WUF5 828 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTCH1-215ENST00000547672 RSPH1Q8WYR4 309 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 ELMO3Q96BJ8 720 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 ZSWIM1Q9BR11 485 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 C11orf70Q9BRQ4 267 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 SMYD3Q9H7B4 428 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 CYLDQ9NQC7 956 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 HES2Q9Y543 173 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 TRIM17Q9Y577 477 aa14.25□□□□□ -0.13
PTCH1-215ENST00000547672 DNM1LO00429 736 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 KRIT1O00522 736 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 PROSCO94903 275 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 CTSHP09668 335 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 CAPN2P17655 700 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 KCNA4P22459 653 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 CTNNA1P35221 906 aaKnown RBP14.24□□□□□ -0.13
PTCH1-215ENST00000547672 MMS22LQ6ZRQ5 1243 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 ZDHHC17Q8IUH5 632 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 PASD1Q8IV76 773 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 IFT20Q8IY31 132 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 C3orf20Q8ND61 904 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 OR6B3Q8NGW1 331 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 WHAMMQ8TF30 809 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 C18orf25Q96B23 403 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-215ENST00000547672 PPP1R10Q96QC0 940 aaKnown RBP14.24□□□□□ -0.13
PTCH1-215ENST00000547672 PSMB7Q99436 277 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTCH1-215ENST00000547672 SLITRK6Q9H5Y7 841 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 HOMER3Q9NSC5 361 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 KLK14Q9P0G3 267 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 KANSL3Q9P2N6 904 aa14.24□□□□□ -0.13
PTCH1-215ENST00000547672 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTCH1-215ENST00000547672 A0A1W2PQ45 241 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 A0A1W2PQY0 241 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 SIGLEC16A6NMB1 481 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TMEM110-MUSTN1A8MSY1 372 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 A8MXQ7 604 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 PDE2AO00408 941 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 DDX3YO15523 660 aaKnown RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 PSTPIP1O43586 416 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 RHOXF2BP0C7M4 288 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 RAP1GAPP47736 663 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 GABRB2P47870 512 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 LHX1P48742 406 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 DSC3Q14574 896 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 LPIN1Q14693 890 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 NAA30Q147X3 362 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 LONRF2Q1L5Z9 754 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TRIM71Q2Q1W2 868 aaKnown RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 ODF2Q5BJF6 829 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 LRRC38Q5VT99 294 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 ARHGAP17Q68EM7 881 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 C8orf74Q6P047 294 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 DNAAF5Q86Y56 855 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 RHOT1Q8IXI2 618 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 EIF1ADQ8N9N8 165 aaKnown RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 LRRN4CLQ8ND94 238 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 FNIP1Q8TF40 1166 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TFAP2BQ92481 460 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TSC1Q92574 1164 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 RHOXF2Q9BQY4 288 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 ELOVL4Q9GZR5 314 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 SDCBP2Q9H190 292 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TSPYL2Q9H2G4 693 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TUBGCP4Q9UGJ1 667 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 FEZ2Q9UHY8 353 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 DSEQ9UL01 958 aa14.23□□□□□ -0.13
PTCH1-215ENST00000547672 PACSIN2Q9UNF0 486 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-215ENST00000547672 TMEM191CA6NGB0 347 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 M0QYV0 167 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 O00370 1275 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 MICAL2O94851 1124 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 GHRP10912 638 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 KRT3P12035 628 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 CKBP12277 381 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 WARSP23381 471 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 CD52P31358 61 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 ACADSBP45954 432 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 DNA2P51530 1060 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 GUCY2FP51841 1108 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 LILRA4P59901 499 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 HADHQ16836 314 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 DENND1BQ6P3S1 775 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 LIMS2Q7Z4I7 341 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 METTL23Q86XA0 190 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 NOA1Q8NC60 698 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 C1orf131Q8NDD1 294 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 CD101Q93033 1021 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 RNPC3Q96LT9 517 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 ADAM2Q99965 735 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 ACBD3Q9H3P7 528 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 ANKZF1Q9H8Y5 726 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 RSAD1Q9HA92 442 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 DDX56Q9NY93 547 aaKnown RBP14.22□□□□□ -0.13
PTCH1-215ENST00000547672 TMEM59LQ9UK28 342 aa14.22□□□□□ -0.13
PTCH1-215ENST00000547672 PTCH2Q9Y6C5 1203 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms