RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 FAXDC2Q96IV6 333 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TARS2Q9BW92 718 aaKnown RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 INO80BQ9C086 356 aaPredicted RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 PIF1Q9H611 641 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 SUGCTQ9HAC7 445 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 TMEM8AQ9HCN3 771 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 SPTLC3Q9NUV7 552 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 SETD4Q9NVD3 440 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 HDAC6Q9UBN7 1215 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 AGO2Q9UKV8 859 aaKnown RBP9.1□□□□□ -0.95
VPS29-203ENST00000546588 PPM1HQ9ULR3 514 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 PTPN22Q9Y2R2 807 aa9.1□□□□□ -0.95
VPS29-203ENST00000546588 A0A087WZ62 844 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 ZNF233A6NK53 670 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 LRRIQ3A6PVS8 624 aaPredicted RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 METTL12A8MUP2 240 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 EPHB6O15197 1021 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 EFSO43281 561 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 B4GALT4O60513 344 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 LCA5LO95447 670 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 GJB1P08034 283 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 MYL3P08590 195 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 TPM1P09493 284 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 CYP2C9P11712 490 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 KRT13P13646 458 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 DARSP14868 501 aaKnown RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 ARF4P18085 180 aaPredicted RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 ANXA13P27216 316 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 CYP2J2P51589 502 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 C1QTNF8P60827 252 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 PLAURQ03405 335 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 PPP3CAQ08209 521 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 SPEM2Q0P670 501 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 PRPF4BQ13523 1007 aaKnown RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 SURF1Q15526 300 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 EXOC3L4Q17RC7 722 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 TRIM71Q2Q1W2 868 aaKnown RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 ZACNQ401N2 412 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 ATF7IP2Q5U623 682 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 KLHDC7AQ5VTJ3 777 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 KRT39Q6A163 491 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 GBP6Q6ZN66 633 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 RUFY4Q6ZNE9 571 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 ZNF662Q6ZS27 426 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 WDR49Q8IV35 697 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 FMNL3Q8IVF7 1028 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 ZSWIM2Q8NEG5 633 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 SPACA7Q96KW9 195 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 FAM81BQ96LP2 452 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 TCF12Q99081 682 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 FDXACB1Q9BRP7 624 aaPredicted RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 TMEM117Q9H0C3 514 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 OSBPL2Q9H1P3 480 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 PDZD7Q9H5P4 517 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 FAM124BQ9H5Z6 455 aaPredicted RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 AGPAT5Q9NUQ2 364 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 AIPL1Q9NZN9 384 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 MARK1Q9P0L2 795 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 TLR6Q9Y2C9 796 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 EFR3BQ9Y2G0 817 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 LUC7L2Q9Y383 392 aaKnown RBP9.09□□□□□ -0.95
VPS29-203ENST00000546588 PTCH2Q9Y6C5 1203 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 DNAH12Q6ZR08 3092 aa9.09□□□□□ -0.95
VPS29-203ENST00000546588 ALPK3Q96L96 1907 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 SSU72P8A0A1W2PR75 194 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 RBAK-RBAKDNI3L0D1 243 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 DNM1LO00429 736 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 CLDN3O15551 220 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 PGK1P00558 417 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 VTNP04004 478 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 CELA3AP09093 270 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 SKILP12757 684 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 UCHL3P15374 230 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 TRIM21P19474 475 aaKnown RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 CD33P20138 364 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 ADH6P28332 368 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 HOXA11P31270 313 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 PRKCIP41743 596 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 KLK7P49862 253 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 MXI1P50539 228 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 ACLYP53396 1101 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 CRYBB1P53674 252 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 NLRP11P59045 1033 aaKnown RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 DLG4P78352 724 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 MYL7Q01449 175 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 LRMPQ12912 555 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 SNX17Q15036 470 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 KCNA10Q16322 511 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 ASTE1Q2TB18 679 aaPredicted RBP9.08□□□□□ -0.96
VPS29-203ENST00000546588 DCAF4L1Q3SXM0 396 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 PPFIBP1Q86W92 1011 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 TMTC1Q8IUR5 882 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 CCNJLQ8IV13 435 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 METTL13Q8N6R0 699 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 C7orf31Q8N865 590 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 OR8K1Q8NGG5 319 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 CXorf38Q8TB03 319 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 JAKMIP2Q96AA8 810 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 ZBTB10Q96DT7 871 aa9.08□□□□□ -0.96
VPS29-203ENST00000546588 NLRP4Q96MN2 994 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms