RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	SNX16	P57768	344 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	TNFAIP2	Q03169	654 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	RNASEL	Q05823	741 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	GPS1	Q13098	491 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	OASL	Q15646	514 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZNF699	Q32M78	642 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	MPZL3	Q6UWV2	235 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	LBX2	Q6XYB7	198 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	TSHZ1	Q6ZSZ6	1077 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	SEPT14	Q6ZU15	432 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	TRABD2A	Q86V40	505 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATP11C	Q8NB49	1132 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	OR5B17	Q8NGF7	314 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZNF398	Q8TD17	642 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PRPF31	Q8WWY3	499 aa	Known RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZBTB45	Q96K62	511 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	MCEE	Q96PE7	176 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	TUBB6	Q9BUF5	446 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	CYP3A43	Q9HB55	503 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	8e-9	■■■■■ 27.8
CPSF7-223	ENST00000544669	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	PRKAG3	Q9UGI9	489 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	DNPEP	Q9ULA0	475 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	KIAA1257	Q9ULG3	409 aa		13.74	□□□□□ -0.21
CPSF7-223	ENST00000544669	ARID2	Q68CP9	1835 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	PHIP	Q8WWQ0	1821 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	FAM170A	A1A519	330 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	LRRD1	A4D1F6	860 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	ACKR2	O00590	384 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	RNF8	O76064	485 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	SLC25A27	O95847	323 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	PRKCB	P05771	671 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	KRT3	P12035	628 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	KRT15	P19012	456 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	CDKN2B	P42772	138 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	VPS41	P49754	854 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	GEMIN4	P57678	1058 aa	Known RBP	13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	SP2	Q02086	613 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	DGKZ	Q13574	1117 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	HIF1A	Q16665	826 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	CCDC142	Q17RM4	750 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	GPAT2	Q6NUI2	795 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	MFSD7	Q6UXD7	560 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	BBS12	Q6ZW61	710 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	SLC35B2	Q8TB61	432 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	MGARP	Q8TDB4	240 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	APBB2	Q92870	758 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	WNK4	Q96J92	1243 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	NFKBIZ	Q9BYH8	718 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	HAPLN2	Q9GZV7	340 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	USH1C	Q9Y6N9	552 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	IVNS1ABP	Q9Y6Y0	642 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	PTPRJ	Q12913	1337 aa		13.73	□□□□□ -0.21
CPSF7-223	ENST00000544669	SGK1	O00141	431 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATP2C2	O75185	946 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	NQO1	P15559	274 aa	Known RBP	13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	UBA1	P22314	1058 aa	Known RBP	13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	PSMA2	P25787	234 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	GJC1	P36383	396 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	MAP2K2	P36507	400 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	CBLB	Q13191	982 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	STIL	Q15468	1287 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	SEPT7	Q16181	437 aa	Known RBP	13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	KAZN	Q674X7	775 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	C4orf22	Q6V702	233 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	SAMD7	Q7Z3H4	446 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	GIMAP7	Q8NHV1	300 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	RSAD2	Q8WXG1	361 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	KLHL29	Q96CT2	875 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	C9orf72	Q96LT7	481 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	ANKRD27	Q96NW4	1050 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	HERPUD2	Q9BSE4	406 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	TRABD	Q9H4I3	376 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	VPS37B	Q9H9H4	285 aa		13.72	□□□□□ -0.21
CPSF7-223	ENST00000544669	IGKV6-21	A0A0C4DH24	114 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	TM9SF1	O15321	606 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	LGR5	O75473	907 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	ATP6V1G2	O95670	118 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	NF2	P35240	595 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	TCF7	P36402	384 aa	Predicted RBP	13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	MYL6	P60660	151 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	RPL7A	P62424	266 aa	Known RBP	13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	TFDP2	Q14188	446 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	LRRC14	Q15048	493 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	TMED2	Q15363	201 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	TAZ	Q16635	292 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	PDK4	Q16654	411 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	FAM47C	Q5HY64	1035 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	ZNF667	Q5HYK9	610 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	FYB2	Q5VWT5	728 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	CYP4F22	Q6NT55	531 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	PHLDB2	Q86SQ0	1253 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	PDIK1L	Q8N165	341 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	LRRC8C	Q8TDW0	803 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	PYROXD1	Q8WU10	500 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	ECT2	Q9H8V3	914 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	RSAD1	Q9HA92	442 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	IFT122	Q9HBG6	1241 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms