RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 SKILP12757 684 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 CYLC1P35663 651 aaPredicted RBP10.16□□□□□ -0.78
YBX3-215ENST00000544504 USP8P40818 1118 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 LILRA4P59901 499 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 PTK2Q05397 1052 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 DSC1Q08554 894 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 SIGLEC14Q08ET2 396 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 KLHL30Q0D2K2 578 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 HYAL1Q12794 435 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 NAB2Q15742 525 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TDRD12Q587J7 1177 aaKnown RBP10.16□□□□□ -0.78
YBX3-215ENST00000544504 ZNF677Q86XU0 584 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 CRIPAKQ8N1N5 446 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TMEM86AQ8N2M4 240 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TXLNBQ8N3L3 684 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TOP1MTQ969P6 601 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 CCDC42Q96M95 316 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 KREMEN1Q96MU8 473 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 MMS19Q96T76 1030 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 C11orf84Q9BUA3 381 aaPredicted RBP10.16□□□□□ -0.78
YBX3-215ENST00000544504 COLEC11Q9BWP8 271 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 DEF6Q9H4E7 631 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TBC1D13Q9NVG8 400 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 NXF1Q9UBU9 619 aaKnown RBP10.16□□□□□ -0.78
YBX3-215ENST00000544504 DSEQ9UL01 958 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 KIAA1257Q9ULG3 409 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 CNTN6Q9UQ52 1028 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 PCDHB4Q9Y5E5 795 aa10.16□□□□□ -0.78
YBX3-215ENST00000544504 TRIP11Q15643 1979 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 TDRD15B5MCY1 1934 aaKnown RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 TBKBP1A7MCY6 615 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 C5orf67F2Z3F1 127 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 RNF225M0QZC1 329 aaPredicted RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 FOXN3O00409 490 aaPredicted RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 CCP110O43303 1012 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 LRRN2O75325 713 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 TBX10O75333 385 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 TACC1O75410 805 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 DGKIO75912 1065 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 KIF4AO95239 1232 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 ALDH2P05091 517 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 RB1P06400 928 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 ODC1P11926 461 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 KRT5P13647 590 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 AVPR2P30518 371 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 ASPAP45381 313 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 ID4P47928 161 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 PDE6CP51160 858 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 GUCY2FP51841 1108 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 VCPP55072 806 aaKnown RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 APBA1Q02410 837 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 SOX4Q06945 474 aaPredicted RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 ELAVL2Q12926 359 aaKnown RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 MAPK8IP2Q13387 824 aaPredicted RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 CBX2Q14781 532 aaPredicted RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 UPP1Q16831 310 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 SPOPLQ6IQ16 392 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 PPP1R2P3Q6NXS1 205 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 GJB7Q6PEY0 223 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 ASCL5Q7RTU5 278 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 UNC93AQ86WB7 457 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 METTL23Q86XA0 190 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 CMTR2Q8IYT2 770 aaKnown RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 TOP6BLQ8N6T0 577 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 APPL2Q8NEU8 664 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 FAM84AQ96KN4 292 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 CASD1Q96PB1 797 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 APOBEC3GQ9HC16 384 aaKnown RBP10.15□□□□□ -0.78
YBX3-215ENST00000544504 CISHQ9NSE2 258 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 RNF19AQ9NV58 838 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 MIOSQ9NXC5 875 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 STK39Q9UEW8 545 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 SNX9Q9Y5X1 595 aa10.15□□□□□ -0.78
YBX3-215ENST00000544504 PRR23AA6NEV1 266 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 CASTOR2A6NHX0 329 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 H0Y858 1186 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 MED7O43513 233 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 AKR1B10O60218 316 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 B3GAT3O94766 335 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 UPP2O95045 317 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 PAEPP09466 180 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 CTNNB1P35222 781 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 LHX1P48742 406 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 AARSP49588 968 aaKnown RBP eCLIP10.14□□□□□ -0.79
YBX3-215ENST00000544504 CLCNKBP51801 687 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 KRT83P78385 493 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 INCA1Q0VD86 236 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 ADAM15Q13444 863 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 BMS1Q14692 1282 aaKnown RBP10.14□□□□□ -0.79
YBX3-215ENST00000544504 STILQ15468 1287 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 SPA17Q15506 151 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 DSTYKQ6XUX3 929 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 IRF2BP2Q7Z5L9 587 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 COLGALT2Q8IYK4 626 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 RBBP8NLQ8NC74 664 aaPredicted RBP10.14□□□□□ -0.79
YBX3-215ENST00000544504 ASIC4Q96FT7 647 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 MSLNLQ96KJ4 702 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 TNIP3Q96KP6 325 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 NT5C1AQ9BXI3 368 aa10.14□□□□□ -0.79
YBX3-215ENST00000544504 CXCL16Q9H2A7 254 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms