RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 APBA1Q02410 837 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 GCNT1Q02742 428 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 RAB33AQ14088 237 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 SYCP1Q15431 976 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 CCDC85BQ15834 202 aaPredicted RBP15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 LLGL2Q6P1M3 1020 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 GJB7Q6PEY0 223 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 TTC39CQ8N584 583 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 PPM1EQ8WY54 764 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 FAM81BQ96LP2 452 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 TMEM209Q96SK2 561 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 CDCA3Q99618 268 aaPredicted RBP15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 SYT15Q9BQS2 421 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 DNAI2Q9GZS0 605 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 CISHQ9NSE2 258 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 IFNKQ9P0W0 207 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 CDH9Q9ULB4 789 aa15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 BARX2Q9UMQ3 279 aaPredicted RBP15.46■□□□□ 0.07
TNFRSF1A-216ENST00000543995 TEX33O43247 280 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 GLUD1P00367 558 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 TPM3P06753 285 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 GTF2F1P35269 517 aaKnown RBP eCLIP15.45■□□□□ 0.061e-6■■■■□ 22.9
TNFRSF1A-216ENST00000543995 KLK7P49862 253 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PSMC1P62191 440 aaKnown RBP15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 HYAL1Q12794 435 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 NR1I3Q14994 352 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SLC39A12Q504Y0 691 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 INTS6LQ5JSJ4 861 aaKnown RBP15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 UNC93AQ86WB7 457 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 DCP1BQ8IZD4 617 aaKnown RBP15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 NEK11Q8NG66 645 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 KAT5Q92993 513 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ERGIC2Q96RQ1 377 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ZCWPW1Q9H0M4 648 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 FAM207AQ9NSI2 230 aaPredicted RBP15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SZT2Q5T011 3432 aa15.45■□□□□ 0.06
TNFRSF1A-216ENST00000543995 FSD2A1L4K1 749 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 WDR27A2RRH5 827 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SPDYE4A6NLX3 237 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 CBFA2T2O43439 604 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 TGM5O43548 720 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ATP2C2O75185 946 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 CILPO75339 1184 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SPATA31D3P0C874 917 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 CLCN4P51793 760 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 CDR1P51861 262 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 INCA1Q0VD86 236 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ORC1Q13415 861 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PTPN21Q16825 1174 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ARHGAP44Q17R89 818 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ZNF394Q53GI3 561 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 RNF19BQ6ZMZ0 732 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 EP400NLQ6ZTU2 488 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SPATA31D4Q6ZUB0 917 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ENOSF1Q7L5Y1 443 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ZNF461Q8TAF7 563 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 TNIP3Q96KP6 325 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PGLYRP2Q96PD5 576 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 NT5C1AQ9BXI3 368 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 DPEP3Q9H4B8 488 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 FAM124BQ9H5Z6 455 aaPredicted RBP15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SIX2Q9NPC8 291 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 HMGXB4Q9UGU5 601 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 DNAJC12Q9UKB3 198 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 GTF3C4Q9UKN8 822 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SIK3Q9Y2K2 1263 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 NME7Q9Y5B8 376 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PCDHB4Q9Y5E5 795 aa15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 MTCL1Q9Y4B5 1905 aaKnown RBP15.44■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SRGAP2BP0DMP2 458 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 KRT5P13647 590 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PTPN1P18031 435 aaKnown RBP15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ELF1P32519 619 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ADCY1Q08828 1119 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 GPR17Q13304 367 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 RAPGEF1Q13905 1077 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SKIV2LQ15477 1246 aaKnown RBP15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 KLHDC7AQ5VTJ3 777 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 TPGS2Q68CL5 300 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 TMEM270Q6UE05 265 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ACOT1Q86TX2 421 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 KREMEN1Q96MU8 473 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 XPO4Q9C0E2 1151 aaKnown RBP15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PLCB1Q9NQ66 1216 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 HCFC2Q9Y5Z7 792 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 MYBPHLA2RUH7 354 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 PRRG1O14668 218 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 NCK2O43639 380 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ABLIM3O94929 683 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 UCHL3P15374 230 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 EPCAMP16422 314 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 RFX1P22670 979 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 USP8P40818 1118 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 RBM10P98175 930 aaKnown RBP15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 SMARCB1Q12824 385 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 MAPRE1Q15691 268 aaKnown RBP15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 MDH1BQ5I0G3 518 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 IQCEQ6IPM2 695 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 ELMSAN1Q6PJG2 1045 aa15.43■□□□□ 0.06
TNFRSF1A-216ENST00000543995 LRRTM3Q86VH5 581 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms