RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 YIPF2Q9BWQ6 316 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 EPC1Q9H2F5 836 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 JPH1Q9HDC5 661 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 HERC5Q9UII4 1024 aaKnown RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 GGT7Q9UJ14 662 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 DOLKQ9UPQ8 538 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 PIN4Q9Y237 131 aaKnown RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TMEM94Q12767 1356 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TMEM154Q6P9G4 183 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TRAPPC11Q7Z392 1133 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SGMS1Q86VZ5 419 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SNX31Q8N9S9 440 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 HES6Q96HZ4 224 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 CNDP1Q96KN2 507 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 RSAD1Q9HA92 442 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SOX13Q9UN79 622 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 VPS9D1Q9Y2B5 631 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 TSC22D4Q9Y3Q8 395 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SNTNA6NMZ2 147 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 USP27XA6NNY8 438 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 F8W810 466 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 EEF2KO00418 725 aaKnown RBP11.1□□□□□ -0.63
CLIP1-209ENST00000537178 MAP3K13O43283 966 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 CAND2O75155 1236 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 RXRBP28702 533 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 STX5Q13190 355 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 LONRF1Q17RB8 773 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 IYDQ6PHW0 289 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 NYAP1Q6ZVC0 841 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 SLC35G2Q8TBE7 412 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 C17orf80Q9BSJ5 609 aa11.1□□□□□ -0.63
CLIP1-209ENST00000537178 EIF2S1P05198 315 aaKnown RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 YWHABP31946 246 aaKnown RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 ACADSBP45954 432 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 KRR1Q13601 381 aaKnown RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 LAMC2Q13753 1193 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 KBTBD12Q3ZCT8 623 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 PIGBQ92521 554 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 GPR101Q96P66 508 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 WDR24Q96S15 920 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 OSBPL8Q9BZF1 889 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TRIM9Q9C026 710 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 POLE3Q9NRF9 147 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 MINPP1Q9UNW1 487 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 NPEPPSP55786 919 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 IL31Q6EBC2 164 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 USP33Q8TEY7 942 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TRIM51Q9BSJ1 452 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 SYBUQ9NX95 663 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 ALS2Q96Q42 1657 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TRPC5OSA6NMA1 111 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 PHF20L1A8MW92 1017 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 NMT1P30419 496 aaKnown RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 HIST2H2ACQ16777 129 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 E4F1Q66K89 784 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 LMBRD2Q68DH5 695 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 HIST2H2AA3Q6FI13 130 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 NAPEPLDQ6IQ20 393 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 CCNI2Q6ZMN8 369 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 HOMEZQ8IX15 550 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 SH2D3CQ8N5H7 860 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 E2F7Q96AV8 911 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 CXorf56Q9H5V9 222 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 CATSPERBQ9H7T0 1116 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 CHMP2BQ9UQN3 213 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 PGK2P07205 417 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 ANXA11P50995 505 aaKnown RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 NCOA4Q13772 614 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 KYNUQ16719 465 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TSGA10IPQ3SY00 556 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TRIM65Q6PJ69 517 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 LDHDQ86WU2 507 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 RBBP8NLQ8NC74 664 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 WDR48Q8TAF3 677 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 WNK4Q96J92 1243 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 SEC16BQ96JE7 1060 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 VPS50Q96JG6 964 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 ECSITQ9BQ95 431 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 SMARCAD1Q9H4L7 1026 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 DMAP1Q9NPF5 467 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TUBGCP4Q9UGJ1 667 aa11.09□□□□□ -0.63
CLIP1-209ENST00000537178 PRG3Q9Y2Y8 225 aaPredicted RBP11.09□□□□□ -0.63
CLIP1-209ENST00000537178 TNPO2O14787 897 aaKnown RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SLC26A4O43511 780 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PCSK1P29120 753 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 MAGEA4P43358 317 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TMEM132DQ14C87 1099 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TRIP4Q15650 581 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TTC33Q6PID6 262 aaPredicted RBP11.08□□□□□ -0.64
CLIP1-209ENST00000537178 SHC4Q6S5L8 630 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 ZNF280CQ8ND82 737 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 HIC2Q96JB3 615 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 KLHL11Q9NVR0 708 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 PALLDQ8WX93 1383 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 NUP188Q5SRE5 1749 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 TMEM120BA0PK00 339 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 HEATR9A2RTY3 570 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 FAM196BA6NMK8 535 aa11.08□□□□□ -0.64
CLIP1-209ENST00000537178 E7ENQ6 273 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms