RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ETS1P14921 441 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 HIRAP54198 1017 aaPredicted RBP13.89□□□□□ -0.19
LDLR-203ENST00000535915 PIGHQ14442 188 aaPredicted RBP13.89□□□□□ -0.19
LDLR-203ENST00000535915 TMEM132AQ24JP5 1023 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 LRRC38Q5VT99 294 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 CDCA2Q69YH5 1023 aaPredicted RBP13.89□□□□□ -0.19
LDLR-203ENST00000535915 GADL1Q6ZQY3 521 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 RHPN2Q8IUC4 686 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 RELL1Q8IUW5 271 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 SRRM1Q8IYB3 904 aaKnown RBP13.89□□□□□ -0.19
LDLR-203ENST00000535915 WDTC1Q8N5D0 677 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 TFAP2BQ92481 460 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 ZNF518BQ9C0D4 1074 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 SAYSD1Q9NPB0 183 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 HAUS2Q9NVX0 235 aa13.89□□□□□ -0.19
LDLR-203ENST00000535915 NOP56O00567 594 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 KIF1CO43896 1103 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 GH1P01241 217 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 COPS2P61201 443 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 TAP1Q03518 808 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 GPS1Q13098 491 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 HSDL1Q3SXM5 330 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 TFDP3Q5H9I0 405 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 NUGGCQ68CJ6 796 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 DLK2Q6UY11 383 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 ALLCQ8N6M5 410 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 FOXP3Q9BZS1 431 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 FGFR1OP2Q9NVK5 253 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 LGALS13Q9UHV8 139 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 SNX3O60493 162 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 ARIH2O95376 493 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 EIF4BP23588 611 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 LACTBP83111 547 aaPredicted RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 PLCB3Q01970 1234 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 MPP2Q14168 576 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 DRICH1Q6PGQ1 229 aaPredicted RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 CFAP57Q96MR6 1250 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 NXF1Q9UBU9 619 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 OTOFQ9HC10 1997 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 hCG_1818297A0A087WSY0 165 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 GOLGA8SH3BPF8 625 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 ABLIM1O14639 778 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 TNNC2P02585 160 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 HOXC6P09630 235 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 CD19P15391 556 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 STX2P32856 288 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 ASPAP45381 313 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 TMED2Q15363 201 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 HP1BP3Q5SSJ5 553 aaPredicted RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 PPP1R15BQ5SWA1 713 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 TRPM8Q7Z2W7 1104 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 CDR2LQ86X02 465 aaPredicted RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 NLRP4Q96MN2 994 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 C2orf40Q9H1Z8 148 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 DDX56Q9NY93 547 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 TPX2Q9ULW0 747 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 PCDHGC3Q9UN70 934 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 PPME1Q9Y570 386 aa13.88□□□□□ -0.19
LDLR-203ENST00000535915 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.88□□□□□ -0.19
LDLR-203ENST00000535915 EXOC1LA0A1B0GW35 172 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 INO80B-WBP1J3KQ70 363 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 SGK1O00141 431 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 GAS2O43903 313 aaKnown RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 KRT19P08727 400 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 MPZL3Q6UWV2 235 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 ARHGEF18Q6ZSZ5 1173 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 FUKQ8N0W3 1084 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 CKAP2Q8WWK9 683 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 ANKRD36BP1Q96IX9 119 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 GPR20Q99678 358 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 INO80BQ9C086 356 aaPredicted RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 NKIRAS1Q9NYS0 192 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 POLIQ9UNA4 740 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 DRG1Q9Y295 367 aaKnown RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 ZBTB42B2RXF5 422 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 RASA4BC9J798 803 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 RASA4O43374 803 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 PGK2P07205 417 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 GJB1P08034 283 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 ABHD2P08910 425 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 PECAM1P16284 738 aaPredicted RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 CDH5P33151 784 aaPredicted RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 CDKN2BP42772 138 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 VCPP55072 806 aaKnown RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 ATF7IP2Q5U623 682 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 DENND1BQ6P3S1 775 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 CEP120Q8N960 986 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 TRAPPC12Q8WVT3 735 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 TMEM121Q9BTD3 319 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 XYLT2Q9H1B5 865 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 R3HDMLQ9H3Y0 253 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 STRIP2Q9ULQ0 834 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 AGTPBP1Q9UPW5 1226 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 USP15Q9Y4E8 981 aaPredicted RBP13.87□□□□□ -0.19
LDLR-203ENST00000535915 CSADQ9Y600 493 aa13.87□□□□□ -0.19
LDLR-203ENST00000535915 B4GALT5O43286 388 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 DNAJC8O75937 253 aaPredicted RBP13.86□□□□□ -0.19
LDLR-203ENST00000535915 IFNB1P01574 187 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 PSMA2P25787 234 aa13.86□□□□□ -0.19
LDLR-203ENST00000535915 RFC1P35251 1148 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms