RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 GPR17Q13304 367 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 TPGS2Q68CL5 300 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 ANKRD54Q6NXT1 300 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 LRSAM1Q6UWE0 723 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 RNF19BQ6ZMZ0 732 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 KREMEN2Q8NCW0 462 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 OR6B3Q8NGW1 331 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 MSLNLQ96KJ4 702 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 PKMYT1Q99640 499 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 ARID3AQ99856 593 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 CRACR2AQ9BSW2 395 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 INTS2Q9H0H0 1204 aaKnown RBP12.9□□□□□ -0.34
CHD4-203ENST00000535717 SNX25Q9H3E2 840 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 CYP3A43Q9HB55 503 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 MAN1C1Q9NR34 630 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 LIMA1Q9UHB6 759 aaKnown RBP12.9□□□□□ -0.34
CHD4-203ENST00000535717 FBXW11Q9UKB1 542 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 COG5Q9UP83 839 aa12.9□□□□□ -0.34
CHD4-203ENST00000535717 H3BQ06 376 aaPredicted RBP12.89□□□□□ -0.35
CHD4-203ENST00000535717 ATP2C2O75185 946 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 SEC24AO95486 1093 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 SRGAP2BP0DMP2 458 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 ATP1A3P13637 1013 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 ATF2P15336 505 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 CDK11BP21127 795 aaKnown RBP12.89□□□□□ -0.35
CHD4-203ENST00000535717 KCNA5P22460 613 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 PCSK1P29120 753 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 CDR1P51861 262 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 TSPY1Q01534 308 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 ADCY1Q08828 1119 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 CCDC142Q17RM4 750 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 SLC39A12Q504Y0 691 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 INTS6LQ5JSJ4 861 aaKnown RBP12.89□□□□□ -0.35
CHD4-203ENST00000535717 SYCE2Q6PIF2 218 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 GBP6Q6ZN66 633 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 LUZP1Q86V48 1076 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 C12orf76Q8N812 135 aaPredicted RBP12.89□□□□□ -0.35
CHD4-203ENST00000535717 HDAC7Q8WUI4 952 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 FAXDC2Q96IV6 333 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 PGLYRP2Q96PD5 576 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 SYT15Q9BQS2 421 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 VPS16Q9H269 839 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 TSPY26PQ9H489 355 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 DPEP3Q9H4B8 488 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 PLEKHA4Q9H4M7 779 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 TMLHEQ9NVH6 421 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 DZANK1Q9NVP4 752 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 GCNT4Q9P109 453 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 AFF4Q9UHB7 1163 aaKnown RBP12.89□□□□□ -0.35
CHD4-203ENST00000535717 CDH9Q9ULB4 789 aa12.89□□□□□ -0.35
CHD4-203ENST00000535717 MTCL1Q9Y4B5 1905 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 UNC80Q8N2C7 3258 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 MYBPHLA2RUH7 354 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 GTPBP10A4D1E9 387 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 MTMR11A4FU01 709 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 LRRC10BA6NIK2 292 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 BECN2A8MW95 431 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 A8MXQ7 604 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 PES1O00541 588 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 RFPL2O75678 378 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 HOXB8P17481 243 aaPredicted RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 CD58P19256 250 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 SLC9A1P19634 815 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 NDST1P52848 882 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 COPB1P53618 953 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 ZNF445P59923 1031 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 PSMC1P62191 440 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 TFF2Q03403 129 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 INCA1Q0VD86 236 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 CUL2Q13617 745 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 CLUL1Q15846 466 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 FAM171BQ6P995 826 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 APTXQ7Z2E3 356 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 ARHGEF19Q8IW93 802 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 TCEAL8Q8IYN2 117 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 DCP1BQ8IZD4 617 aaKnown RBP12.88□□□□□ -0.35
CHD4-203ENST00000535717 ATAD1Q8NBU5 361 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 SLC7A14Q8TBB6 771 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 FEZF2Q8TBJ5 459 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 FAM200AQ8TCP9 573 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 NT5C1BQ96P26 610 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 LPIN3Q9BQK8 851 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 APOL5Q9BWW9 433 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 S1PR5Q9H228 398 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 CRISPLD1Q9H336 500 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 CRTAC1Q9NQ79 661 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 HMGXB4Q9UGU5 601 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 DPP7Q9UHL4 492 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 GTF3C4Q9UKN8 822 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 MAFFQ9ULX9 164 aa12.88□□□□□ -0.35
CHD4-203ENST00000535717 C5orf42Q9H799 3197 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 PRRG1O14668 218 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 ZMYND10O75800 440 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 C8AP07357 584 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 PTPN1P18031 435 aaKnown RBP12.87□□□□□ -0.35
CHD4-203ENST00000535717 PON1P27169 355 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 ELF1P32519 619 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 APBA1Q02410 837 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 DUSP4Q13115 394 aa12.87□□□□□ -0.35
CHD4-203ENST00000535717 ORC1Q13415 861 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms