RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PPP4R4Q6NUP7 873 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 SYCE2Q6PIF2 218 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 BOLLQ8N9W6 283 aaKnown RBP3.52□□□□□ -1.85
CD44-238ENST00000534296 KLHDC4Q8TBB5 520 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 DIS3LQ8TF46 1054 aaKnown RBP3.52□□□□□ -1.85
CD44-238ENST00000534296 ATRIPQ8WXE1 791 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 LPIN2Q92539 896 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 FAM136AQ96C01 138 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 LRGUKQ96M69 825 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 CGRRF1Q99675 332 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 VKORC1Q9BQB6 163 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 ACTRT3Q9BYD9 372 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 PCGF6Q9BYE7 350 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 RHOBTB2Q9BYZ6 727 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 CDH19Q9H159 772 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 KLC4Q9NSK0 619 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 ETAA1Q9NY74 926 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 SHOC2Q9UQ13 582 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 PLEKHM1Q9Y4G2 1056 aa3.52□□□□□ -1.85
CD44-238ENST00000534296 A0A1W2PPL8 197 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 AHSGP02765 367 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 THP07101 528 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 GRPP07492 148 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PIM1P11309 404 aaPredicted RBP3.51□□□□□ -1.85
CD44-238ENST00000534296 CYP2C9P11712 490 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 CHRM3P20309 590 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 GATA3P23771 443 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 GCLCP48506 637 aaPredicted RBP3.51□□□□□ -1.85
CD44-238ENST00000534296 LOXL3P58215 753 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 RAB1AP62820 205 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 NKX6-1P78426 367 aaPredicted RBP3.51□□□□□ -1.85
CD44-238ENST00000534296 EXOSC9Q06265 439 aaKnown RBP3.51□□□□□ -1.85
CD44-238ENST00000534296 TCF15Q12870 199 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 IQCB1Q15051 598 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PPP2R5AQ15172 486 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 LONRF3Q496Y0 759 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 RBM20Q5T481 1227 aaKnown RBP3.51□□□□□ -1.85
CD44-238ENST00000534296 TAF2Q6P1X5 1199 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 FBXO42Q6P3S6 717 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PPP1R32Q7Z5V6 425 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 ARHGEF25Q86VW2 580 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PPP1R3BQ86XI6 285 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 FAM46DQ8NEK8 389 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 STAG1Q8WVM7 1258 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 JDP2Q8WYK2 163 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 TFAP2BQ92481 460 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 FKBP10Q96AY3 582 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PDLIM2Q96JY6 352 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 PBKQ96KB5 322 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 UROC1Q96N76 676 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 KRTAP9-8Q9BYQ0 159 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 SYNPO2LQ9H987 977 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 ARMT1Q9H993 441 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 ZSCAN32Q9NX65 697 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 EHD3Q9NZN3 535 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 CPA4Q9UI42 421 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 COX11Q9Y6N1 276 aa3.51□□□□□ -1.85
CD44-238ENST00000534296 FAM227AF5H4B4 570 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ERC2O15083 957 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 TLR5O60602 858 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 UNC5CO95185 931 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ALDH2P05091 517 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 NDUFB7P17568 137 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 HTR1BP28222 390 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 PXNP49023 591 aaPredicted RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 ALDH9A1P49189 494 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 MAPK10P53779 464 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 GPSM2P81274 684 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 MRPS21P82921 87 aaKnown RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 BMPR2Q13873 1038 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ZNF267Q14586 743 aaPredicted RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 TXNRD1Q16881 649 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 MINDY4Q4G0A6 757 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ZNF618Q5T7W0 954 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 TSTD2Q5T7W7 516 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ICE2Q659A1 982 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 LMBRD2Q68DH5 695 aaPredicted RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 KIAA0895LQ68EN5 471 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ZNF783Q6ZMS7 281 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ZNF804AQ7Z570 1209 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 PEG10Q86TG7 708 aaKnown RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 CHPFQ8IZ52 775 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 SLC46A1Q96NT5 459 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 HAPLN3Q96S86 360 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 TTYH3Q9C0H2 523 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 SLC12A5Q9H2X9 1139 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 FAM204AQ9H8W3 233 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 CPNE5Q9HCH3 593 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 FOXJ2Q9P0K8 574 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 HESX1Q9UBX0 185 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 PCDHA6Q9UN73 950 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 G3BP2Q9UN86 482 aaKnown RBP3.5□□□□□ -1.85
CD44-238ENST00000534296 TMX2Q9Y320 296 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 ENTPD2Q9Y5L3 495 aa3.5□□□□□ -1.85
CD44-238ENST00000534296 A0A088AWK7 358 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 GOLGA6CA6NDK9 693 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 GOLGA6BA6NDN3 693 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 MASP2O00187 686 aa3.49□□□□□ -1.85
CD44-238ENST00000534296 PHGDHO43175 533 aaKnown RBP3.49□□□□□ -1.85
CD44-238ENST00000534296 CTNND1O60716 968 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms