RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PIK3CAP42336 1068 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 GCLMP48507 274 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 PPP3CAQ08209 521 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 TWF1Q12792 350 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 DUSP4Q13115 394 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 NFE2Q16621 373 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 SGSM1Q2NKQ1 1148 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 SKOR2Q2VWA4 1001 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 INTS6LQ5JSJ4 861 aaKnown RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 GRASPQ7Z6J2 395 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 LRRTM3Q86VH5 581 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 RNF135Q8IUD6 432 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 ZDHHC14Q8IZN3 488 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 PLCD3Q8N3E9 789 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 ATAD1Q8NBU5 361 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 SPPL2BQ8TCT7 592 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 ACSF2Q96CM8 615 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 MMS19Q96T76 1030 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 PKMYT1Q99640 499 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 DUSP9Q99956 384 aaKnown RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 TMEM8AQ9HCN3 771 aa16.11■□□□□ 0.17
CPSF1-208ENST00000532560 AVENQ9NQS1 362 aaPredicted RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 DNMT3BQ9UBC3 853 aaKnown RBP16.11■□□□□ 0.17
CPSF1-208ENST00000532560 BDP1A6H8Y1 2624 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 N4BP1O75113 896 aaKnown RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 ASS1P00966 412 aaKnown RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 HLA-DRAP01903 254 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 FSHRP23945 695 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 MXI1P50539 228 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 PABPC1LQ4VXU2 614 aaKnown RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 ZNF667Q5HYK9 610 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 KRT39Q6A163 491 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 GET4Q7L5D6 327 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 ELMOD1Q8N336 334 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 TTC9BQ8N6N2 239 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 GPT2Q8TD30 523 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 IMPG2Q9BZV3 1241 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 METTL14Q9HCE5 456 aaKnown RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 ABCB6Q9NP58 842 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 HCFC1R1Q9NWW0 138 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 NXF1Q9UBU9 619 aaKnown RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 ARMCX3Q9UH62 379 aaPredicted RBP16.1■□□□□ 0.17
CPSF1-208ENST00000532560 CDH9Q9ULB4 789 aa16.1■□□□□ 0.17
CPSF1-208ENST00000532560 DOCK6Q96HP0 2047 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 DOCK8Q8NF50 2099 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 HCRTO43612 131 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 RHOP08100 348 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 P4HA1P13674 534 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 ACAT1P24752 427 aaKnown RBP16.09■□□□□ 0.17
CPSF1-208ENST00000532560 TUFMP49411 452 aaKnown RBP16.09■□□□□ 0.17
CPSF1-208ENST00000532560 NTHL1P78549 312 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 IQCEQ6IPM2 695 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 FRMD5Q7Z6J6 570 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 FILIP1Q7Z7B0 1213 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 MLKLQ8NB16 471 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 TAS1R2Q8TE23 839 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 KHSRPQ92945 711 aaKnown RBP eCLIP16.09■□□□□ 0.17
CPSF1-208ENST00000532560 SYT15Q9BQS2 421 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 MRPL45Q9BRJ2 306 aaKnown RBP16.09■□□□□ 0.17
CPSF1-208ENST00000532560 DNAJC25Q9H1X3 360 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 SNX25Q9H3E2 840 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 SMYD3Q9H7B4 428 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 TMLHEQ9NVH6 421 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 ABI2Q9NYB9 513 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-208ENST00000532560 CEP72Q9P209 647 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 EPS15L1Q9UBC2 864 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 PCDHB5Q9Y5E4 795 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 NOTCH4Q99466 2003 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 MUC3AQ02505 3323 aa16.09■□□□□ 0.17
CPSF1-208ENST00000532560 DCXO43602 365 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 CLSTN1O94985 981 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 PTPN2P17706 415 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 LMO2P25791 158 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 GBP2P32456 591 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 ALDH1A3P47895 512 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 EPHB3P54753 998 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 EPHA5P54756 1037 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 NOP14P78316 857 aaKnown RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 DCAF17Q5H9S7 520 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 TCERG1LQ5VWI1 586 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 FAM171BQ6P995 826 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 LEMD2Q8NC56 503 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 SLC35C1Q96A29 364 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 FUBP3Q96I24 572 aaKnown RBP eCLIP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 ZNF512Q96ME7 567 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 MYADMQ96S97 322 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 SEPT5Q99719 369 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 CORO1BQ9BR76 489 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 MMRN2Q9H8L6 949 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 MUTYHQ9UIF7 546 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 RWDD2AQ9UIY3 292 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 SLC27A5Q9Y2P5 690 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 ASB3Q9Y575 518 aa16.08■□□□□ 0.16
CPSF1-208ENST00000532560 ZFP37Q9Y6Q3 630 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-208ENST00000532560 PI4K2BG5E9Z4 385 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 GNA14O95837 355 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 MBD3O95983 291 aa16.07■□□□□ 0.16
CPSF1-208ENST00000532560 HAPLN1P10915 354 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-208ENST00000532560 ALADP13716 330 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms