RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.52□□□□□ -0.57
NEDD8-205ENST00000527046 TGM5O43548 720 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 HUS1O60921 280 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 CILPO75339 1184 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 PDGFRBP09619 1106 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 SPATA31D3P0C874 917 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 EPCAMP16422 314 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 CDK11BP21127 795 aaKnown RBP11.52□□□□□ -0.57
NEDD8-205ENST00000527046 IGFBP4P22692 258 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 GNL1P36915 607 aaPredicted RBP11.52□□□□□ -0.57
NEDD8-205ENST00000527046 NRIP1P48552 1158 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 NDST1P52848 882 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 RAD23BP54727 409 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 CUL2Q13617 745 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 EXOC3L4Q17RC7 722 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 KLHDC7AQ5VTJ3 777 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 KIAA1841Q6NSI8 718 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 SCARA5Q6ZMJ2 495 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 GBP6Q6ZN66 633 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 SPATA31D4Q6ZUB0 917 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 PALB2Q86YC2 1186 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 GLYCTKQ8IVS8 523 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 ZNF461Q8TAF7 563 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 MMS19Q96T76 1030 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 CYP3A43Q9HB55 503 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.52□□□□□ -0.571e-6■■■□□ 15.3
NEDD8-205ENST00000527046 TMEM30AQ9NV96 361 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 GCNT4Q9P109 453 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 CLEC1BQ9P126 229 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 SSX2IPQ9Y2D8 614 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 HCFC2Q9Y5Z7 792 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 REV3LO60673 3130 aa11.52□□□□□ -0.57
NEDD8-205ENST00000527046 PTPRDP23468 1912 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 H7C4K7 107 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 C1RP00736 705 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 CALCAP01258 141 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 LHX1P48742 406 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 NDUFV1P49821 464 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 ZNF132P52740 706 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 TNNC1P63316 161 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 GCNT1Q02742 428 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 ORC1Q13415 861 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 SYCP1Q15431 976 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 INTS6LQ5JSJ4 861 aaKnown RBP11.51□□□□□ -0.57
NEDD8-205ENST00000527046 IQCEQ6IPM2 695 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 ZNF280DQ6N043 979 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 TTC9BQ8N6N2 239 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 EFHBQ8N7U6 833 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 SLC4A11Q8NBS3 891 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 ATAD1Q8NBU5 361 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 OR6B3Q8NGW1 331 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 NT5C1BQ96P26 610 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 GAS2L1Q99501 681 aaPredicted RBP11.51□□□□□ -0.57
NEDD8-205ENST00000527046 TLE6Q9H808 572 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 UBE2TQ9NPD8 197 aaPredicted RBP11.51□□□□□ -0.57
NEDD8-205ENST00000527046 PLCB1Q9NQ66 1216 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 CISHQ9NSE2 258 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 APEX2Q9UBZ4 518 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 GTF3C4Q9UKN8 822 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 BARX2Q9UMQ3 279 aaPredicted RBP11.51□□□□□ -0.57
NEDD8-205ENST00000527046 DOCK6Q96HP0 2047 aa11.51□□□□□ -0.57
NEDD8-205ENST00000527046 MTMR11A4FU01 709 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 OR6C75A6NL08 312 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 TBX10O75333 385 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 ATF2P15336 505 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 UCHL3P15374 230 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 PTPN1P18031 435 aaKnown RBP11.5□□□□□ -0.57
NEDD8-205ENST00000527046 KLRC2P26717 231 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 PSMC1P62191 440 aaKnown RBP11.5□□□□□ -0.57
NEDD8-205ENST00000527046 UBXN1Q04323 297 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 CCDC85BQ15834 202 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-205ENST00000527046 WDR44Q5JSH3 913 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 PDXDC1Q6P996 788 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 SYCE2Q6PIF2 218 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 ACOT1Q86TX2 421 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 UNC93AQ86WB7 457 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 METTL23Q86XA0 190 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 C12orf29Q8N999 325 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 SHC3Q92529 594 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 SYT15Q9BQS2 421 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 EMILIN2Q9BXX0 1053 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 OXCT2Q9BYC2 517 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-205ENST00000527046 B3GNT5Q9BYG0 378 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 RHOBTB2Q9BYZ6 727 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 XPO4Q9C0E2 1151 aaKnown RBP11.5□□□□□ -0.57
NEDD8-205ENST00000527046 TTYH3Q9C0H2 523 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 S1PR5Q9H228 398 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 IGFLR1Q9H665 355 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 ACP6Q9NPH0 428 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 IFNKQ9P0W0 207 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 CEP72Q9P209 647 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 FBXW11Q9UKB1 542 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 DNAJC12Q9UKB3 198 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 CDH9Q9ULB4 789 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 FHOD1Q9Y613 1164 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 NOTCH4Q99466 2003 aa11.5□□□□□ -0.57
NEDD8-205ENST00000527046 A8MXQ7 604 aa11.49□□□□□ -0.57
NEDD8-205ENST00000527046 FOXN3O00409 490 aaPredicted RBP11.49□□□□□ -0.57
NEDD8-205ENST00000527046 PNMA6AP0CW24 399 aaPredicted RBP11.49□□□□□ -0.57
NEDD8-205ENST00000527046 FOSL2P15408 326 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms