RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 BPIFB4P59827 614 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 ZNF560Q96MR9 790 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 FUT8Q9BYC5 575 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 MIOSQ9NXC5 875 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 CNTN6Q9UQ52 1028 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 SASH3O75995 380 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 ASPAP45381 313 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 RNASE9P60153 205 aaKnown RBP20.09■□□□□ 0.81
VPS28-207ENST00000526977 GLB1LQ6UWU2 654 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 BCO2Q9BYV7 579 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 CYP3A43Q9HB55 503 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 CTTNBP2NLQ9P2B4 639 aa20.09■□□□□ 0.81
VPS28-207ENST00000526977 IBSPP21815 317 aaPredicted RBP20.08■□□□□ 0.8
VPS28-207ENST00000526977 RPL9P32969 192 aaKnown RBP20.08■□□□□ 0.8
VPS28-207ENST00000526977 SCNN1GP51170 649 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 TNNC1P63316 161 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 SOX4Q06945 474 aaPredicted RBP20.08■□□□□ 0.8
VPS28-207ENST00000526977 GRIK3Q13003 919 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 ACAD10Q6JQN1 1059 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 DEFB128Q7Z7B8 93 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 HDAC7Q8WUI4 952 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 CALR3Q96L12 384 aaKnown RBP20.08■□□□□ 0.8
VPS28-207ENST00000526977 L1RE1Q9UN81 338 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 PCDHB7Q9Y5E2 793 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 PCDHB4Q9Y5E5 795 aa20.08■□□□□ 0.8
VPS28-207ENST00000526977 ZMYND10O75800 440 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 RAG1P15918 1043 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 MCM3P25205 808 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 AFF1P51825 1210 aaKnown RBP20.07■□□□□ 0.8
VPS28-207ENST00000526977 CLEC16AQ2KHT3 1053 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 CCDC70Q6NSX1 233 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 CNKSR3Q6P9H4 555 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 TMEM130Q8N3G9 435 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 TTC39CQ8N584 583 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 SELENOOQ9BVL4 669 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 PRDM5Q9NQX1 630 aaPredicted RBP20.07■□□□□ 0.8
VPS28-207ENST00000526977 CISHQ9NSE2 258 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 KANSL3Q9P2N6 904 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 TANC1Q9C0D5 1861 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 TRIM43BA6NCK2 446 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 CEP104O60308 925 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 IKBKEQ14164 716 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 UBR7Q8N806 425 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 ACTRT1Q8TDG2 376 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 TRIM43Q96BQ3 446 aaPredicted RBP20.07■□□□□ 0.8
VPS28-207ENST00000526977 GOLGA2P5Q9HBQ8 144 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 CHORDC1Q9UHD1 332 aaPredicted RBP20.07■□□□□ 0.8
VPS28-207ENST00000526977 ALG6Q9Y672 507 aa20.07■□□□□ 0.8
VPS28-207ENST00000526977 MTA2O94776 668 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 CYP1A2P05177 515 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 WEE2P0C1S8 567 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 TAF6P49848 677 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 SV2CQ496J9 727 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 TMEM270Q6UE05 265 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 CCNI2Q6ZMN8 369 aaPredicted RBP20.06■□□□□ 0.8
VPS28-207ENST00000526977 ZNF677Q86XU0 584 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 TMEM199Q8N511 208 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 RSPH1Q8WYR4 309 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 DDX27Q96GQ7 796 aaKnown RBP20.06■□□□□ 0.8
VPS28-207ENST00000526977 DMGDHQ9UI17 866 aaKnown RBP20.06■□□□□ 0.8
VPS28-207ENST00000526977 TMEM59LQ9UK28 342 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 LRFN2Q9ULH4 789 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 POLIQ9UNA4 740 aa20.06■□□□□ 0.8
VPS28-207ENST00000526977 PDCD11Q14690 1871 aaKnown RBP20.06■□□□□ 0.8
VPS28-207ENST00000526977 KPNA7A9QM74 516 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 PPEF2O14830 753 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 DDX3YO15523 660 aaKnown RBP20.05■□□□□ 0.8
VPS28-207ENST00000526977 HOXA2O43364 376 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 POMCP01189 267 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 UNGP13051 313 aaPredicted RBP20.05■□□□□ 0.8
VPS28-207ENST00000526977 MRPS25P82663 173 aaKnown RBP20.05■□□□□ 0.8
VPS28-207ENST00000526977 MFSD5Q6N075 450 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 URGCPQ8TCY9 931 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 GDAP2Q9NXN4 497 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 INPP5FQ9Y2H2 1132 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 SNX9Q9Y5X1 595 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 MAP2K7O14733 419 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 PLA2G4AP47712 749 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 LILRA4P59901 499 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 TUSC3Q13454 348 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 TCTN1Q2MV58 587 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 NOMO2Q5JPE7 1267 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 SCARA5Q6ZMJ2 495 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 KRT222Q8N1A0 295 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 RASGEF1CQ8N431 466 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 UROC1Q96N76 676 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 HINFPQ9BQA5 517 aa20.05■□□□□ 0.8
VPS28-207ENST00000526977 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.04■□□□□ 0.8
VPS28-207ENST00000526977 ATMINO43313 823 aaPredicted RBP20.04■□□□□ 0.8
VPS28-207ENST00000526977 PFKMP08237 780 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 CD58P19256 250 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 PAX3P23760 479 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 SLC7A5Q01650 507 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 GLE1Q53GS7 698 aaKnown RBP20.04■□□□□ 0.8
VPS28-207ENST00000526977 CLLU1OSQ5K130 101 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 C11orf63Q6NUN7 778 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 ABI1Q8IZP0 508 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 RBBP8NLQ8NC74 664 aaPredicted RBP20.04■□□□□ 0.8
VPS28-207ENST00000526977 GTF3C4Q9UKN8 822 aa20.04■□□□□ 0.8
VPS28-207ENST00000526977 ITGB8P26012 769 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms