RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SPPL2BQ8TCT7 592 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 C2orf15Q8WU43 125 aaKnown RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 MMS19Q96T76 1030 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 GZF1Q9H116 711 aaPredicted RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 TMLHEQ9NVH6 421 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 WNT16Q9UBV4 365 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 ARIH1Q9Y4X5 557 aaPredicted RBP22.44■■□□□ 1.18
VPS28-203ENST00000524521 ASB3Q9Y575 518 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 PCDHB5Q9Y5E4 795 aa22.44■■□□□ 1.18
VPS28-203ENST00000524521 NRG2O14511 850 aaPredicted RBP22.43■■□□□ 1.18
VPS28-203ENST00000524521 PHACTR2O75167 634 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 VCPP55072 806 aaKnown RBP22.43■■□□□ 1.18
VPS28-203ENST00000524521 TRPC3Q13507 836 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 CEP135Q66GS9 1140 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 SIX5Q8N196 739 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 FLCNQ8NFG4 579 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 ENGASEQ8NFI3 743 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 SPATA18Q8TC71 538 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 PLEKHO2Q8TD55 490 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 GPR152Q8TDT2 470 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 PARD3BQ8TEW8 1205 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 LRRC3Q9BY71 257 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 CA14Q9ULX7 337 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 TRAF3IP3Q9Y228 551 aa22.43■■□□□ 1.18
VPS28-203ENST00000524521 GABRDO14764 452 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 MOSPD3O75425 235 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 HAPLN1P10915 354 aaPredicted RBP22.42■■□□□ 1.18
VPS28-203ENST00000524521 GPC5P78333 572 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 FAM160A1Q05DH4 1040 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 SNW1Q13573 536 aaKnown RBP22.42■■□□□ 1.18
VPS28-203ENST00000524521 VEPH1Q14D04 833 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 NFE2Q16621 373 aaPredicted RBP22.42■■□□□ 1.18
VPS28-203ENST00000524521 IER5LQ5T953 404 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 ITIH5Q86UX2 942 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 GUF1Q8N442 669 aaKnown RBP22.42■■□□□ 1.18
VPS28-203ENST00000524521 TMEM174Q8WUU8 243 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 PSMG2Q969U7 264 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 LPIN3Q9BQK8 851 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 PI4K2AQ9BTU6 479 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 GTF3C4Q9UKN8 822 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 FRMD4BQ9Y2L6 1034 aa22.42■■□□□ 1.18
VPS28-203ENST00000524521 ZDBF2Q9HCK1 2354 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 LRRIQ3A6PVS8 624 aaPredicted RBP22.41■■□□□ 1.18
VPS28-203ENST00000524521 STK25O00506 426 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 HCRTO43612 131 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 PCSK1P29120 753 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 MYL6P60660 151 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 BIRC3Q13489 604 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 TEAD2Q15562 447 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 TAF12Q16514 161 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 INTS6LQ5JSJ4 861 aaKnown RBP22.41■■□□□ 1.18
VPS28-203ENST00000524521 FAM78AQ5JUQ0 283 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 TANGO2Q6ICL3 276 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 LIMS2Q7Z4I7 341 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 TMC8Q8IU68 726 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 SHKBP1Q8TBC3 707 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 GIPC2Q8TF65 315 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 ZSWIM3Q96MP5 696 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 KCNH6Q9H252 994 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 SLC2A4RGQ9NR83 387 aa22.41■■□□□ 1.18
VPS28-203ENST00000524521 ZNF318Q5VUA4 2279 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 A0A1W2PRU2 124 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 ECI2O75521 394 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 PDGFRBP09619 1106 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 ATF6P18850 670 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 LMO2P25791 158 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 AP3M2P53677 418 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 WDR72Q3MJ13 1102 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 ASTLQ6HA08 431 aaPredicted RBP22.4■■□□□ 1.18
VPS28-203ENST00000524521 KBTBD7Q8WVZ9 684 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 PLA2G2FQ9BZM2 168 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 SLITRK6Q9H5Y7 841 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 ZFP14Q9HCL3 533 aa22.4■■□□□ 1.18
VPS28-203ENST00000524521 ZNF334Q9HCZ1 680 aaPredicted RBP22.4■■□□□ 1.18
VPS28-203ENST00000524521 CIZ1Q9ULV3 898 aaPredicted RBP22.4■■□□□ 1.18
VPS28-203ENST00000524521 KRBA1A5PL33 1030 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 CLSTN1O94985 981 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 NPR3P17342 541 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 NR2F2P24468 414 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 ATICP31939 592 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 TNNC1P63316 161 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 DLG4P78352 724 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 CLDN10P78369 228 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 TDRD10Q5VZ19 366 aaKnown RBP22.39■■□□□ 1.17
VPS28-203ENST00000524521 SMYD4Q8IYR2 804 aaPredicted RBP22.39■■□□□ 1.17
VPS28-203ENST00000524521 FAM122AQ96E09 287 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 ASB16Q96NS5 453 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 GPR88Q9GZN0 384 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 SNX25Q9H3E2 840 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 ATXN3LQ9H3M9 355 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 RMND1Q9NWS8 449 aa22.39■■□□□ 1.17
VPS28-203ENST00000524521 NXF1Q9UBU9 619 aaKnown RBP22.39■■□□□ 1.17
VPS28-203ENST00000524521 MYBPHLA2RUH7 354 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 ATP2C2O75185 946 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 SMC2O95347 1197 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 FGF19O95750 216 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 C4BPAP04003 597 aaKnown RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 RFX1P22670 979 aa22.38■■□□□ 1.17
VPS28-203ENST00000524521 WARSP23381 471 aaKnown RBP22.38■■□□□ 1.17
VPS28-203ENST00000524521 CYP2F1P24903 491 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms