RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	RIN3	Q8TB24	985 aa		11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	USP13	Q92995	863 aa	Predicted RBP	11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	TNFRSF25	Q93038	417 aa		11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	EXOC4	Q96A65	974 aa		11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	NUSAP1	Q9BXS6	441 aa	Known RBP	11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	BRMS1	Q9HCU9	246 aa		11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	LOC400499	M0QZD8	3231 aa		11.42	□□□□□ -0.58
CLDND1-231	ENST00000515620	ASCC3	Q8N3C0	2202 aa	Known RBP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ATXN2	Q99700	1313 aa	Known RBP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	SMG1	Q96Q15	3661 aa	Known RBP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ABLIM1	O14639	778 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	CAPNS1	P04632	268 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ATF6	P18850	670 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	GJA4	P35212	333 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	NPTX2	P47972	431 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	AARS	P49588	968 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	PEX3	P56589	373 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	MYBPC2	Q14324	1141 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	SLC10A6	Q3KNW5	377 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ARMCX5	Q6P1M9	558 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	TAS1R3	Q7RTX0	852 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	PIP4P1	Q86T03	277 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	CPA6	Q8N4T0	437 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	TTC16	Q8NEE8	873 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	GIPC2	Q8TF65	315 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	CD101	Q93033	1021 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ZBTB45	Q96K62	511 aa	Predicted RBP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	TMEM60	Q9H2L4	133 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	BHMT2	Q9H2M3	363 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ZSWIM6	Q9HCJ5	1215 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ANKFY1	Q9P2R3	1169 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	TBX20	Q9UMR3	447 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	CYP46A1	Q9Y6A2	500 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	KIAA1549L	Q6ZVL6	1849 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ASH1L	Q9NR48	2969 aa	Known RBP	11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	ABCA7	Q8IZY2	2146 aa		11.41	□□□□□ -0.58
CLDND1-231	ENST00000515620	CIT	O14578	2027 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	THADA	Q6YHU6	1953 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	EIF4E1B	A6NMX2	242 aa	Known RBP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620		H0Y626	953 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	TRIM16	O95361	564 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	CXCL8	P10145	99 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	PROZ	P22891	400 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	RPA1	P27694	616 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	LRPAP1	P30533	357 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	RDX	P35241	583 aa	Known RBP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	GUCY2F	P51841	1108 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	SEC13	P55735	322 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	FAM193A	P78312	1265 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	SCRN1	Q12765	414 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	SCAP	Q12770	1279 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	SEMA3B	Q13214	749 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	PDGFRL	Q15198	375 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	MGAT5B	Q3V5L5	792 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	MDGA1	Q8NFP4	955 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	OR10T2	Q8NGX3	314 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	ERMN	Q8TAM6	284 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	CNOT6L	Q96LI5	555 aa	Known RBP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	BBC3	Q96PG8	261 aa	Predicted RBP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	ECT2	Q9H8V3	914 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	KIF9	Q9HAQ2	790 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	FSCN3	Q9NQT6	498 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	TDP1	Q9NUW8	608 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	HSFX1	Q9UBD0	423 aa		11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	HELZ2	Q9BYK8	2649 aa	Known RBP	11.4	□□□□□ -0.58
CLDND1-231	ENST00000515620	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	FAM221B	A6H8Z2	402 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	PPEF2	O14830	753 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	CFI	P05156	583 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TYMP	P19971	482 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	MCM7	P33993	719 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	PTGER3	P43115	390 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TUFM	P49411	452 aa	Known RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	ATXN3	P54252	364 aa	Predicted RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	NLRP12	P59046	1061 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	DMP1	Q13316	513 aa	Predicted RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	MTF1	Q14872	753 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	SLC39A12	Q504Y0	691 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	C2orf27A	Q580R0	203 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TXNDC8	Q6A555	127 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	LPCAT2	Q7L5N7	544 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TMEM150A	Q86TG1	271 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	RASSF3	Q86WH2	238 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	SYT12	Q8IV01	421 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TMEFF1	Q8IYR6	380 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	HDDC3	Q8N4P3	179 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	RLN3	Q8WXF3	142 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	GTPBP2	Q9BX10	602 aa	Known RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TMEM134	Q9H6X4	195 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	KMT5A	Q9NQR1	393 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	TMEM74B	Q9NUR3	256 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	ARHGAP28	Q9P2N2	729 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	ORC3	Q9UBD5	711 aa	Predicted RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	MBD1	Q9UIS9	605 aa	Predicted RBP	11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	ZMYM5	Q9UJ78	669 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	WNT6	Q9Y6F9	365 aa		11.39	□□□□□ -0.59
CLDND1-231	ENST00000515620	MYO16	Q9Y6X6	1858 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms