RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 CAPN11Q9UMQ6 739 aa22.39■■□□□ 1.17
LSM6-207ENST00000515311 PCDHB4Q9Y5E5 795 aa22.39■■□□□ 1.17
LSM6-207ENST00000515311 ATG2AQ2TAZ0 1938 aa22.39■■□□□ 1.17
LSM6-207ENST00000515311 OR6C75A6NL08 312 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 A8MXQ7 604 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 FSCN2O14926 492 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 ERVFC1P60507 584 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 TBX2Q13207 712 aaPredicted RBP22.38■■□□□ 1.17
LSM6-207ENST00000515311 CAMK1Q14012 370 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 SMC1AQ14683 1233 aaKnown RBP22.38■■□□□ 1.17
LSM6-207ENST00000515311 PRSS55Q6UWB4 352 aaPredicted RBP22.38■■□□□ 1.17
LSM6-207ENST00000515311 TMC7Q7Z402 723 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 TMC6Q7Z403 805 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 PPFIBP1Q86W92 1011 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 FMNL3Q8IVF7 1028 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 FAM71AQ8IYT1 594 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 ZNF397Q8NF99 534 aaPredicted RBP22.38■■□□□ 1.17
LSM6-207ENST00000515311 WHAMMQ8TF30 809 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 TNIP3Q96KP6 325 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 ENTPD7Q9NQZ7 604 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 FNIP2Q9P278 1114 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 HMGXB4Q9UGU5 601 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 CDH9Q9ULB4 789 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 NME7Q9Y5B8 376 aa22.38■■□□□ 1.17
LSM6-207ENST00000515311 EPOPA6NHQ4 379 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 FOXN3O00409 490 aaPredicted RBP22.37■■□□□ 1.17
LSM6-207ENST00000515311 SOX1O00570 391 aaPredicted RBP22.37■■□□□ 1.17
LSM6-207ENST00000515311 TPM1P09493 284 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 KRT5P13647 590 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 LMO2P25791 158 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 RAD23BP54727 409 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 ZBED6P86452 979 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 SLC8B1Q6J4K2 584 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 TMEM270Q6UE05 265 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 CRYBG2Q8N1P7 616 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 RBBP8NLQ8NC74 664 aaPredicted RBP22.37■■□□□ 1.17
LSM6-207ENST00000515311 OR10T2Q8NGX3 314 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 GDPD5Q8WTR4 605 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 ELOVL4Q9GZR5 314 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 NUCKS1Q9H1E3 243 aaKnown RBP22.37■■□□□ 1.17
LSM6-207ENST00000515311 RXFP1Q9HBX9 757 aa22.37■■□□□ 1.17
LSM6-207ENST00000515311 LUC7L2Q9Y383 392 aaKnown RBP22.37■■□□□ 1.17
LSM6-207ENST00000515311 C2CD2LO14523 706 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 CXCL14O95715 111 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 PAEPP09466 180 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 SOX5P35711 763 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 STAT1P42224 750 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 TSPY1Q01534 308 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 MRPL43Q8N983 215 aaKnown RBP22.36■■□□□ 1.17
LSM6-207ENST00000515311 SLC4A11Q8NBS3 891 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 B3GALNT2Q8NCR0 500 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 TMEM176AQ96HP8 235 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 TWNKQ96RR1 684 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 SYT15Q9BQS2 421 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 ZCWPW1Q9H0M4 648 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 KIAA1257Q9ULG3 409 aa22.36■■□□□ 1.17
LSM6-207ENST00000515311 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 HCRTO43612 131 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 PDGFRBP09619 1106 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 ACAT1P24752 427 aaKnown RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 CASP14P31944 242 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 USP8P40818 1118 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 NDUFV1P49821 464 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 FXR1P51114 621 aaKnown RBP eCLIP22.35■■□□□ 1.17
LSM6-207ENST00000515311 PTPROQ16827 1216 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 INTS6LQ5JSJ4 861 aaKnown RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 DRC7Q8IY82 874 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 AUTS2Q8WXX7 1259 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 ANP32BQ92688 251 aaKnown RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 SYN2Q92777 582 aaPredicted RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 PKMYT1Q99640 499 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 TTYH1Q9H313 450 aaPredicted RBP22.35■■□□□ 1.17
LSM6-207ENST00000515311 DPEP3Q9H4B8 488 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 IMPACTQ9P2X3 320 aa22.35■■□□□ 1.17
LSM6-207ENST00000515311 C2orf71A6NGG8 1288 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 LRRC53A6NM62 1247 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 RNF225M0QZC1 329 aaPredicted RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 LPXNO60711 386 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 PNMA6AP0CW24 399 aaPredicted RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 PTPN1P18031 435 aaKnown RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 BPIFB4P59827 614 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 MAPRE1Q15691 268 aaKnown RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 ZNF394Q53GI3 561 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 PLPP4Q5VZY2 271 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 GPR153Q6NV75 609 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 FAM171BQ6P995 826 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 RSPO2Q6UXX9 243 aaPredicted RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 ACOT1Q86TX2 421 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 DCP1BQ8IZD4 617 aaKnown RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 CPLX3Q8WVH0 158 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 MRPL38Q96DV4 380 aaKnown RBP22.34■■□□□ 1.17
LSM6-207ENST00000515311 CLSTN3Q9BQT9 956 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 EMILIN2Q9BXX0 1053 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 CDY1Q9Y6F8 540 aa22.34■■□□□ 1.17
LSM6-207ENST00000515311 CYP26A1O43174 497 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 MFAP3LO75121 409 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 CNPP09543 421 aaKnown RBP22.33■■□□□ 1.17
LSM6-207ENST00000515311 CCDC172P0C7W6 258 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 IRS1P35568 1242 aa22.33■■□□□ 1.17
LSM6-207ENST00000515311 PSMC1P62191 440 aaKnown RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms