RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MARCOQ9UEW3 520 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RAD51BO15315 384 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF862O60290 1169 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CDH16O75309 829 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 RFC5P40937 340 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PLA2G4AP47712 749 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TFDP2Q14188 446 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 AASDHQ4L235 1098 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIQKQ629K1 86 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 C4orf33Q8N1A6 199 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 ALKBH8Q96BT7 664 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SNF8Q96H20 258 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM167AQ96KS9 214 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 C9orf72Q96LT7 481 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PIGUQ9H490 435 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 KLHL8Q9P2G9 620 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 KNDC1Q76NI1 1749 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 CLTCQ00610 1675 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 A0A0G2JPF8 293 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 HNRNPCL3B7ZW38 293 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 H7C0S8 307 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 BTN3A3O00478 584 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 HNRNPCL4P0DMR1 293 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PIK3R1P27986 724 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TALDO1P37837 337 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 QARSP47897 775 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SPANXN2Q5MJ10 180 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TMEM270Q6UE05 265 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 SETD3Q86TU7 594 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PCYOX1LQ8NBM8 494 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 PPP1R36Q96LQ0 422 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 KLHL4Q9C0H6 718 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 NFKBIL1Q9UBC1 381 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 TMCO1Q9UM00 188 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 POLIQ9UNA4 740 aa9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 FARP1Q9Y4F1 1045 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-218ENST00000513024 A0A1W2PQC6 194 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PIK3R2O00459 728 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 KLHL41O60662 606 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ITGAXP20702 1163 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 COASYQ13057 564 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 MMRN1Q13201 1228 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ITIH4Q14624 930 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 KIAA1755Q5JYT7 1200 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TMEM110Q86TL2 294 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TTC30AQ86WT1 665 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ANKMY2Q8IV38 441 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TTC13Q8NBP0 860 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ENGASEQ8NFI3 743 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 HNRNPLLQ8WVV9 542 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 MAGED4Q96JG8 741 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 CITED4Q96RK1 184 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ADGRL3Q9HAR2 1447 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 AGPAT5Q9NUQ2 364 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PVALEFA0A1B0GWK0 134 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 K7ERI5 159 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 FKBP6O75344 327 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TNFAIP8O95379 198 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TYK2P29597 1187 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 GTF2A2P52657 109 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 AKIRIN2Q53H80 203 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC157Q569K6 752 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 RASGRP2Q7LDG7 609 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 HAUS6Q7Z4H7 955 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PRUNE1Q86TP1 453 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 CLVS1Q8IUQ0 354 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TMEM35BQ8NCS4 154 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PPP1R16BQ96T49 567 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 JMJD4Q9H9V9 463 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 STOML2Q9UJZ1 356 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 ADAM30Q9UKF2 790 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 RABL2BQ9UNT1 228 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 VEPH1Q14D04 833 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PDZK1Q5T2W1 519 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 THEM5Q8N1Q8 247 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TC2NQ8N9U0 490 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 RFFLQ8WZ73 363 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 FUCA2Q9BTY2 467 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 MSTO1Q9BUK6 570 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 MXD3Q9BW11 206 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 OSBPL8Q9BZF1 889 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 KDM4CQ9H3R0 1056 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TMEM161AQ9NX61 479 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 DDX56Q9NY93 547 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 CPSF3Q9UKF6 684 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 TELO2Q9Y4R8 837 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 PREX1Q8TCU6 1659 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 NEDD4P46934 1319 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 UBN2Q6ZU65 1347 aa9.09□□□□□ -0.95
LIMCH1-218ENST00000513024 SRGAP2CP0DJJ0 459 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 BMP3P12645 472 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 ALOX12P18054 663 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 EPS8Q12929 822 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 DHX34Q14147 1143 aaKnown RBP9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 TTLL4Q14679 1199 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 RNF19BQ6ZMZ0 732 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 THNSL1Q8IYQ7 743 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 XXYLT1Q8NBI6 393 aa9.09□□□□□ -0.96
LIMCH1-218ENST00000513024 HPS3Q969F9 1004 aa9.09□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms