RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 PTPRDP23468 1912 aa12.58□□□□□ -0.39
RNF4-216ENST00000511859 FAM205CA6NFA0 338 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 TYMPP19971 482 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 MUTP22033 750 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 PROZP22891 400 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 LRPAP1P30533 357 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 GJA4P35212 333 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 KRT2P35908 639 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.4
RNF4-216ENST00000511859 STK3Q13188 491 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 NR5A1Q13285 461 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 HNRNPDQ14103 355 aaKnown RBP12.58□□□□□ -0.4
RNF4-216ENST00000511859 TAF12Q16514 161 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 ZNF423Q2M1K9 1284 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 SLC10A6Q3KNW5 377 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 OVOS1Q6IE37 1185 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 C19orf48Q6RUI8 117 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 RASSF3Q86WH2 238 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 SYT12Q8IV01 421 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 CD101Q93033 1021 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 IL21Q9HBE4 155 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 GJB4Q9NTQ9 266 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 TDP1Q9NUW8 608 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 STK36Q9NRP7 1315 aa12.58□□□□□ -0.4
RNF4-216ENST00000511859 SPAARA0A1B0GVQ0 90 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 EIF4E1BA6NMX2 242 aaKnown RBP12.57□□□□□ -0.4
RNF4-216ENST00000511859 CCDC169A6NNP5 214 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 TNFRSF10BO14763 440 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 CYP3A5P20815 502 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 PSMD2Q13200 908 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 SPDYCQ5MJ68 293 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 SLC23A3Q6PIS1 610 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 MPZL3Q6UWV2 235 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 DSTYKQ6XUX3 929 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 HDDC3Q8N4P3 179 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 CHCHD4Q8N4Q1 142 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 CPA6Q8N4T0 437 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 ERMNQ8TAM6 284 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 WASF1Q92558 559 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 USP13Q92995 863 aaPredicted RBP12.57□□□□□ -0.4
RNF4-216ENST00000511859 TNFRSF25Q93038 417 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 CNOT6LQ96LI5 555 aaKnown RBP12.57□□□□□ -0.4
RNF4-216ENST00000511859 TARS2Q9BW92 718 aaKnown RBP12.57□□□□□ -0.4
RNF4-216ENST00000511859 ECT2Q9H8V3 914 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 PLEKHA5Q9HAU0 1116 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 POLD4Q9HCU8 107 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 CCL26Q9Y258 94 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 RBM19Q9Y4C8 960 aaKnown RBP12.57□□□□□ -0.4
RNF4-216ENST00000511859 CYP46A1Q9Y6A2 500 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 KIAA1549LQ6ZVL6 1849 aa12.57□□□□□ -0.4
RNF4-216ENST00000511859 ABLIM1O14639 778 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 SOAT2O75908 522 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 LARGE1O95461 756 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 SEC24BO95487 1268 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 ARSAP15289 507 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 ENGP17813 658 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 PAX3P23760 479 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 MAPK8P45983 427 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 PEX3P56589 373 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 SMARCB1Q12824 385 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 ZNF268Q14587 947 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 COL28A1Q2UY09 1125 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 MGAT5BQ3V5L5 792 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 LPCAT2Q7L5N7 544 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 RAB44Q7Z6P3 723 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 TTC9BQ8N6N2 239 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 MAB21L3Q8N8X9 362 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 EZH1Q92800 747 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 LPIN3Q9BQK8 851 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 TPSD1Q9BZJ3 242 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 TUBGCP4Q9UGJ1 667 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 GOLGA4Q13439 2230 aaKnown RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 CEP192Q8TEP8 1941 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 ADAMTS9Q9P2N4 1935 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 SHROOM3Q8TF72 1996 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 MAST4O15021 2626 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 KNTC1P50748 2209 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 MAP3K13O43283 966 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 XPOTO43592 962 aaKnown RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 ALDH1A2O94788 518 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 BCKDHBP21953 392 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 NPTX2P47972 431 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 ATXN3P54252 364 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 SCRN1Q12765 414 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 SCAPQ12770 1279 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 NR1H3Q13133 447 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 DMP1Q13316 513 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 ZBTB6Q15916 424 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 LMBRD2Q68DH5 695 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 ANO7Q6IWH7 933 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 OLIG1Q8TAK6 271 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 CEP76Q8TAP6 659 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 C2orf15Q8WU43 125 aaKnown RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 SEPT5Q99719 369 aaPredicted RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 LARP6Q9BRS8 491 aaKnown RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 ARHGAP28Q9P2N2 729 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 KCNG1Q9UIX4 513 aa12.56□□□□□ -0.4
RNF4-216ENST00000511859 UBQLN1Q9UMX0 589 aaKnown RBP12.56□□□□□ -0.4
RNF4-216ENST00000511859 TNRC6BQ9UPQ9 1833 aaKnown RBP12.55□□□□□ -0.4
RNF4-216ENST00000511859 NAV2Q8IVL1 2488 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms