RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ALDH1A3P47895 512 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 MXI1P50539 228 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ADAM17P78536 824 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 PPATQ06203 517 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 LETM2Q2VYF4 491 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 RNF207Q6ZRF8 634 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 UTS2BQ765I0 119 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CLVS1Q8IUQ0 354 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 BORCS5Q969J3 196 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 VPS37BQ9H9H4 285 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CNGB3Q9NQW8 809 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 TTLL3Q9Y4R7 772 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 LRRC37A3O60309 1634 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 TEX28O15482 410 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ATF2P15336 505 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ITIH2P19823 946 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 HMOX2P30519 316 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CDK9P50750 372 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 TCHHL1Q5QJ38 904 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 NIPAL1Q6NVV3 410 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 AAGABQ6PD74 315 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 RNF19BQ6ZMZ0 732 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 ENAHQ8N8S7 591 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 MIGA1Q8NAN2 632 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CXorf38Q8TB03 319 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 LNX1Q8TBB1 728 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 LRRC59Q96AG4 307 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 BTBD9Q96Q07 612 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 FAM118BQ9BPY3 351 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 MAK16Q9BXY0 300 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 CCDC68Q9H2F9 335 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 KCNK13Q9HB14 408 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 AJAP1Q9UKB5 411 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 COG5Q9UP83 839 aa12.63□□□□□ -0.39
LIMCH1-213ENST00000511496 METP08581 1390 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CCDC162PA2VCL2 907 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TPPPO94811 219 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 ALAS1P13196 640 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 HSD17B4P51659 736 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 SNAPC2Q13487 334 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 DNAL1Q4LDG9 190 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 SGO2Q562F6 1265 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 RFPL4BQ6ZWI9 263 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TRIM59Q8IWR1 403 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 Q8N9G6 341 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 EME1Q96AY2 570 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 SNF8Q96H20 258 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 RILPQ96NA2 401 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TAS2R14Q9NYV8 317 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 PIK3C2BO00750 1634 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 GSG1L2A8MUP6 293 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 PRPF4O43172 522 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 AQP9O43315 295 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 ZC3H11AO75152 810 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 GUCY1B2O75343 617 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 DDHD2O94830 711 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 FXNQ16595 210 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 PUS10Q3MIT2 529 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 RALGPS1Q5JS13 557 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 DGKHQ86XP1 1220 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CPNE8Q86YQ8 564 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 LZTR1Q8N653 840 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 GRIN3AQ8TCU5 1115 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TTC17Q96AE7 1141 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 ZNF512Q96ME7 567 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CAAP1Q9H8G2 361 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 WHRNQ9P202 907 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 MARCOQ9UEW3 520 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 EBF1Q9UH73 591 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 RTL9Q8NET4 1388 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CLDN3O15551 220 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A9O60656 530 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A6P19224 532 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A1P22309 533 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A4P22310 534 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A3P35503 534 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A5P35504 534 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CACNB1Q02641 598 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UBE3CQ15386 1083 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TRIM16LQ309B1 348 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 RSPH3Q86UC2 560 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 SLC13A5Q86YT5 568 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 ALLCQ8N6M5 410 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TSPAN14Q8NG11 270 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 TCP10LQ8TDR4 215 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CAPSLQ8WWF8 208 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A7Q9HAW7 530 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A10Q9HAW8 530 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 UGT1A8Q9HAW9 530 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 KCNQ5Q9NR82 932 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 PLA2G4CQ9UP65 541 aa12.62□□□□□ -0.39
LIMCH1-213ENST00000511496 CCNT1O60563 726 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 TCEA3O75764 348 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 XIAPP98170 497 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 CLUL1Q15846 466 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 TIGD2Q4W5G0 525 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 ADGRG6Q86SQ4 1221 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 ALDH16A1Q8IZ83 802 aa12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 GABPB2Q8TAK5 448 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-213ENST00000511496 PSPC1Q8WXF1 523 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms