RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 LIMS2Q7Z4I7 341 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 OSTM1Q86WC4 334 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 RDH13Q8NBN7 331 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 ZSCAN18Q8TBC5 510 aaPredicted RBP19.3■□□□□ 0.68
TPM3-220ENST00000509601 C2orf15Q8WU43 125 aaKnown RBP19.3■□□□□ 0.68
TPM3-220ENST00000509601 LPIN3Q9BQK8 851 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 MKNK1Q9BUB5 465 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 GPR88Q9GZN0 384 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 IL21Q9HBE4 155 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 HPSEQ9Y251 543 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 MTF2Q9Y483 593 aaPredicted RBP19.3■□□□□ 0.68
TPM3-220ENST00000509601 F5P12259 2224 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 VPS13AQ96RL7 3174 aa19.3■□□□□ 0.68
TPM3-220ENST00000509601 CACNA1IQ9P0X4 2223 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 NCANO14594 1321 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 KANSL1LA0AUZ9 987 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 GABRDO14764 452 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 HUS1O60921 280 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 TMEM191BP0C7N4 346 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 CD72P21854 359 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 BFSP1Q12934 665 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 STK4Q13043 487 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 GRM2Q14416 872 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 DUOXA2Q1HG44 320 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 MGAT5BQ3V5L5 792 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 STXBP5Q5T5C0 1151 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 DCP1BQ8IZD4 617 aaKnown RBP19.29■□□□□ 0.68
TPM3-220ENST00000509601 SPPL2BQ8TCT7 592 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 RSPRY1Q96DX4 576 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 ANKRD36BP1Q96IX9 119 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 PKMYT1Q99640 499 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 SEPT5Q99719 369 aaPredicted RBP19.29■□□□□ 0.68
TPM3-220ENST00000509601 ACBD6Q9BR61 282 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 GZF1Q9H116 711 aaPredicted RBP19.29■□□□□ 0.68
TPM3-220ENST00000509601 DDX43Q9NXZ2 648 aaKnown RBP19.29■□□□□ 0.68
TPM3-220ENST00000509601 SNX9Q9Y5X1 595 aa19.29■□□□□ 0.68
TPM3-220ENST00000509601 UBE4BO95155 1302 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 PROB1E7EW31 1015 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 CST3P01034 146 aaPredicted RBP19.28■□□□□ 0.68
TPM3-220ENST00000509601 PFKFB1P16118 471 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 RFX1P22670 979 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 NBL1P41271 181 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 ANGPT1Q15389 498 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 SNRNP35Q16560 246 aaKnown RBP19.28■□□□□ 0.68
TPM3-220ENST00000509601 SOWAHAQ2M3V2 549 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 ITIH5Q86UX2 942 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 GPIHBP1Q8IV16 184 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 MFSD6LQ8IWD5 586 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 CEP57L1Q8IYX8 460 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 TMEM86AQ8N2M4 240 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 TOP6BLQ8N6T0 577 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 XXYLT1Q8NBI6 393 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 PJA1Q8NG27 643 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 GIPC2Q8TF65 315 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 ZNF516Q92618 1163 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 SPATA32Q96LK8 384 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 TRMT61BQ9BVS5 477 aaKnown RBP19.28■□□□□ 0.68
TPM3-220ENST00000509601 ATXN3LQ9H3M9 355 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 PCDHB5Q9Y5E4 795 aa19.28■□□□□ 0.68
TPM3-220ENST00000509601 PTPRZ1P23471 2315 aaPredicted RBP19.27■□□□□ 0.68
TPM3-220ENST00000509601 FAM237AA0A1B0GTK4 181 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 HCRTO43612 131 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 PSMC3P17980 439 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 ACAT1P24752 427 aaKnown RBP19.27■□□□□ 0.68
TPM3-220ENST00000509601 GABRR2P28476 465 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 CYP2J2P51589 502 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 FZD5Q13467 585 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 KNOP1Q1ED39 458 aaKnown RBP19.27■□□□□ 0.68
TPM3-220ENST00000509601 DPH6Q7L8W6 267 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 TRAPPC11Q7Z392 1133 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 WDR49Q8IV35 697 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 ARID3BQ8IVW6 561 aaPredicted RBP19.27■□□□□ 0.68
TPM3-220ENST00000509601 C12orf56Q8IXR9 622 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 SPATA18Q8TC71 538 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 HPDLQ96IR7 371 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 LRRC3BQ96PB8 259 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 OSBPL6Q9BZF3 934 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 BRD9Q9H8M2 597 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 HEBP1Q9NRV9 189 aa19.27■□□□□ 0.68
TPM3-220ENST00000509601 ABI2Q9NYB9 513 aaPredicted RBP19.27■□□□□ 0.68
TPM3-220ENST00000509601 RIF1Q5UIP0 2472 aaKnown RBP19.26■□□□□ 0.67
TPM3-220ENST00000509601 FAM170BA6NMN3 283 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 HEPACAM2A8MVW5 462 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 TNNC2P02585 160 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 HMGA1P17096 107 aaKnown RBP19.26■□□□□ 0.67
TPM3-220ENST00000509601 GDI1P31150 447 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 LHX1P48742 406 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 GPR15P49685 360 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 KRT85P78386 507 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 TSPY1Q01534 308 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 CYP24A1Q07973 514 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 PSMD6Q15008 389 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 NFE2Q16621 373 aaPredicted RBP19.26■□□□□ 0.67
TPM3-220ENST00000509601 CCDC142Q17RM4 750 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 KMT5BQ4FZB7 885 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 INTS6LQ5JSJ4 861 aaKnown RBP19.26■□□□□ 0.67
TPM3-220ENST00000509601 KIAA0895Q8NCT3 520 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 FAM200AQ8TCP9 573 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 KBTBD7Q8WVZ9 684 aa19.26■□□□□ 0.67
TPM3-220ENST00000509601 DNASE1L2Q92874 299 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms