RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CENPCQ03188 943 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 ELF2Q15723 593 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 C1orf127Q8N9H9 656 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.85□□□□□ -0.99
USP54-215ENST00000497106 FRMD8P1Q9BZ68 369 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 TSPYL2Q9H2G4 693 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 NXF3Q9H4D5 531 aaKnown RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 SMIM28A0A1B0GU29 152 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 DAPK3O43293 454 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 MYCP01106 439 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 HADHBP55084 474 aaKnown RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 FMO1Q01740 532 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 TUSC3Q13454 348 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 NFE2Q16621 373 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 CFAP58Q5T655 872 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 DCLRE1AQ6PJP8 1040 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 HOOK3Q86VS8 718 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 LNX1Q8TBB1 728 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 FAM149B1Q96BN6 582 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 PSMB7Q99436 277 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 SENP6Q9GZR1 1112 aaPredicted RBP8.85□□□□□ -0.99
USP54-215ENST00000497106 TMEM39AQ9NV64 488 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 RRN3Q9NYV6 651 aa8.85□□□□□ -0.99
USP54-215ENST00000497106 OPA1O60313 960 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 PQBP1O60828 265 aaKnown RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 VNN1O95497 513 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 CHRNA3P32297 505 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 ARL4AP40617 200 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 APBA1Q02410 837 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 ASTE1Q2TB18 679 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 ZBTB41Q5SVQ8 909 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 MEI1Q5TIA1 1274 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 SYDE1Q6ZW31 735 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 TADA2BQ86TJ2 420 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 KLHL7Q8IXQ5 586 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 CEP120Q8N960 986 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 LACRTQ9GZZ8 138 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 SLC12A6Q9UHW9 1150 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 POLIQ9UNA4 740 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 MYH9P35579 1960 aaKnown RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 FAM187AA6NFU0 413 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 CCL5P13501 91 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 ZFXP17010 805 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 IKBKEQ14164 716 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 NOMO2Q5JPE7 1267 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 MARCH8Q5T0T0 291 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 C18orf25Q96B23 403 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 STMN4Q9H169 189 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 CDH9Q9ULB4 789 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 PTPN22Q9Y2R2 807 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 PLXNB2O15031 1838 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 RNF225M0QZC1 329 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 CILPO75339 1184 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 PROSCO94903 275 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 GPD1P21695 349 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 CA8P35219 290 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 ZNF200P98182 395 aaPredicted RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 CUL1Q13616 776 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 DHX34Q14147 1143 aaKnown RBP8.84□□□□□ -0.99
USP54-215ENST00000497106 ZNF280DQ6N043 979 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 SCYL2Q6P3W7 929 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 ANKLE1Q8NAG6 615 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 SLC30A5Q8TAD4 765 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 GAD1Q99259 594 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 CCDC77Q9BR77 488 aa8.84□□□□□ -0.99
USP54-215ENST00000497106 B3GAT3O94766 335 aa8.84□□□□□ -1
USP54-215ENST00000497106 MYZAPP0CAP1 466 aa8.84□□□□□ -1
USP54-215ENST00000497106 MLH1P40692 756 aa8.84□□□□□ -1
USP54-215ENST00000497106 OR1G1P47890 313 aa8.84□□□□□ -1
USP54-215ENST00000497106 CTCFP49711 727 aaPredicted RBP8.84□□□□□ -1
USP54-215ENST00000497106 COPS2P61201 443 aa8.84□□□□□ -1
USP54-215ENST00000497106 MTA1Q13330 715 aa8.84□□□□□ -1
USP54-215ENST00000497106 AMHR2Q16671 573 aa8.84□□□□□ -1
USP54-215ENST00000497106 EFCAB13Q8IY85 973 aa8.84□□□□□ -1
USP54-215ENST00000497106 TMEM199Q8N511 208 aa8.84□□□□□ -1
USP54-215ENST00000497106 C3orf20Q8ND61 904 aa8.84□□□□□ -1
USP54-215ENST00000497106 LMO3Q8TAP4 145 aa8.84□□□□□ -1
USP54-215ENST00000497106 ZNF516Q92618 1163 aa8.84□□□□□ -1
USP54-215ENST00000497106 CYFIP2Q96F07 1278 aa8.84□□□□□ -1
USP54-215ENST00000497106 HSFY1Q96LI6 401 aa8.84□□□□□ -1
USP54-215ENST00000497106 SYT15Q9BQS2 421 aa8.84□□□□□ -1
USP54-215ENST00000497106 EIF2AQ9BY44 585 aaKnown RBP8.84□□□□□ -1
USP54-215ENST00000497106 PRDM16Q9HAZ2 1276 aa8.84□□□□□ -1
USP54-215ENST00000497106 ATP11BQ9Y2G3 1177 aa8.84□□□□□ -1
USP54-215ENST00000497106 ALG6Q9Y672 507 aa8.84□□□□□ -1
USP54-215ENST00000497106 CCDC151A5D8V7 595 aa8.83□□□□□ -1
USP54-215ENST00000497106 SPDYE4A6NLX3 237 aa8.83□□□□□ -1
USP54-215ENST00000497106 MTA2O94776 668 aa8.83□□□□□ -1
USP54-215ENST00000497106 RNASE9P60153 205 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 SMARCB1Q12824 385 aa8.83□□□□□ -1
USP54-215ENST00000497106 NECAB2Q7Z6G3 386 aa8.83□□□□□ -1
USP54-215ENST00000497106 KCTD6Q8NC69 237 aa8.83□□□□□ -1
USP54-215ENST00000497106 PLEKHO2Q8TD55 490 aa8.83□□□□□ -1
USP54-215ENST00000497106 RNF139Q8WU17 664 aa8.83□□□□□ -1
USP54-215ENST00000497106 KAT5Q92993 513 aa8.83□□□□□ -1
USP54-215ENST00000497106 MAGOHBQ96A72 148 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 ZSWIM1Q9BR11 485 aa8.83□□□□□ -1
USP54-215ENST00000497106 BCO2Q9BYV7 579 aa8.83□□□□□ -1
USP54-215ENST00000497106 FAM129AQ9BZQ8 928 aa8.83□□□□□ -1
USP54-215ENST00000497106 TRIM10Q9UDY6 481 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms