RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 CST3P01034 146 aaPredicted RBP17.54■□□□□ 0.4
SF3A1-209ENST00000496189 FAM163BP0C2L3 166 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 PIK3CAP42336 1068 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 MYL6P60660 151 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 CLDN10P78369 228 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 MTMR3Q13615 1198 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 PTPN21Q16825 1174 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 SOWAHAQ2M3V2 549 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 SGSM1Q2NKQ1 1148 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 TDRD10Q5VZ19 366 aaKnown RBP17.54■□□□□ 0.4
SF3A1-209ENST00000496189 FOXR2Q6PJQ5 311 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 OR10T2Q8NGX3 314 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 TAF4BQ92750 862 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 DNAI2Q9GZS0 605 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 ASAH2Q9NR71 780 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 ABI2Q9NYB9 513 aaPredicted RBP17.54■□□□□ 0.4
SF3A1-209ENST00000496189 NXF1Q9UBU9 619 aaKnown RBP17.54■□□□□ 0.4
SF3A1-209ENST00000496189 LIMD1Q9UGP4 676 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 SORCS3Q9UPU3 1222 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 MRPS23Q9Y3D9 190 aaKnown RBP17.54■□□□□ 0.4
SF3A1-209ENST00000496189 ASB3Q9Y575 518 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 DENND4AQ7Z401 1863 aa17.54■□□□□ 0.4
SF3A1-209ENST00000496189 FGF19O95750 216 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 RHOP08100 348 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 BMP6P22004 513 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 PAK1Q13153 545 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 ZACNQ401N2 412 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 INTS6LQ5JSJ4 861 aaKnown RBP17.53■□□□□ 0.4
SF3A1-209ENST00000496189 TCERG1LQ5VWI1 586 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 ANKRD40Q6AI12 368 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 C4orf50Q6ZRC1 276 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 ATAD1Q8NBU5 361 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 OR6B3Q8NGW1 331 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 NELFBQ8WX92 580 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 ZNF516Q92618 1163 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 NXPE3Q969Y0 559 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 TMEM209Q96SK2 561 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 MMRN2Q9H8L6 949 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 IGSF9Q9P2J2 1179 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 EPS15L1Q9UBC2 864 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 DNMT3BQ9UBC3 853 aaKnown RBP17.53■□□□□ 0.4
SF3A1-209ENST00000496189 CDH9Q9ULB4 789 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 SLC27A5Q9Y2P5 690 aa17.53■□□□□ 0.4
SF3A1-209ENST00000496189 TACC1O75410 805 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 FGFR1OPO95684 399 aaKnown RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 C4BPAP04003 597 aaKnown RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 CD44P16070 742 aaKnown RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 WARSP23381 471 aaKnown RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 GTF2H1P32780 548 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 GNL1P36915 607 aaPredicted RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 NLRP12P59046 1061 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 DLG4P78352 724 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 NTHL1P78549 312 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 SASS6Q6UVJ0 657 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 MTSS1LQ765P7 747 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 SPATA2LQ8IUW3 424 aaPredicted RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 UBALD2Q8IYN6 164 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 PLEKHO2Q8TD55 490 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 GCNAQ96QF7 691 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 RTP3Q9BQQ7 232 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 SYT15Q9BQS2 421 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 VRTNQ9H8Y1 702 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 METTL14Q9HCE5 456 aaKnown RBP17.52■□□□□ 0.4
SF3A1-209ENST00000496189 TMEM8AQ9HCN3 771 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 HCFC1R1Q9NWW0 138 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 CDH7Q9ULB5 785 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 CTNND2Q9UQB3 1225 aa17.52■□□□□ 0.4
SF3A1-209ENST00000496189 C5orf42Q9H799 3197 aa17.52■□□□□ 0.39
SF3A1-209ENST00000496189 GABRDO14764 452 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 TRIM49P0CI25 452 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 TRIM49CP0CI26 452 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 LAMP2P13473 410 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 ACAT1P24752 427 aaKnown RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 GCLMP48507 274 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 RPL10AP62906 217 aaKnown RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 SKOR2Q2VWA4 1001 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 CCDC40Q4G0X9 1142 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 DCAF17Q5H9S7 520 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 CT47A1Q5JQC4 288 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 TMEM31Q5JXX7 168 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 KRT39Q6A163 491 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 RBM43Q6ZSC3 357 aaKnown RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 SV2AQ7L0J3 742 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 FEZF2Q8TBJ5 459 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 EDAQ92838 391 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 CEP63Q96MT8 703 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 GZF1Q9H116 711 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 EPHX3Q9H6B9 360 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 ABCB6Q9NP58 842 aa17.51■□□□□ 0.39
SF3A1-209ENST00000496189 AVENQ9NQS1 362 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 ARMCX3Q9UH62 379 aaPredicted RBP17.51■□□□□ 0.39
SF3A1-209ENST00000496189 TRIM49BA6NDI0 452 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 A8MXQ7 604 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 HLA-DRAP01903 254 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 PDGFRBP09619 1106 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 MYL4P12829 197 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 MXI1P50539 228 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 ZXDAP98168 799 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 KLHL40Q2TBA0 621 aa17.5■□□□□ 0.39
SF3A1-209ENST00000496189 FGF13Q92913 245 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms